.Rbuildignore
.Rprofile
.gitattributes
.gitignore
.gitmodules
DESCRIPTION
LICENSE.md
NAMESPACE
R/theme_custom_maps.R
README.md
bash/copy_tex.bat
bash/copy_tex.sh
bash/setup_python_env.sh
data/00_placeholder.txt
data/log_preprocessing.log
data/log_visibility.log
data/processed/00_placeholder.txt
data/rasters/README.txt
data/raw/README.txt
data/results/00_placeholder.txt
data/results/data_clogit_fit_vis.csv
data/results/data_visibility_steps_summary.csv
data/results/data_wgi_summary.csv
data/results/mod_summary_duration_rrv.txt
data/results/mod_summary_rrv_movement.txt
data/results/mod_summary_rrv_n_patches.txt
data/results/mod_summary_rrv_visibility.txt
data/results/mod_summary_swallow_movement.txt
data/results/model_coefs_vis_ndvi.txt
data/results/model_vis_ndvi_plot_data.csv
data/spatial/README.txt
data/spatial/hula_extent/hula_bbox.dbf
data/spatial/hula_extent/hula_bbox.prj
data/spatial/hula_extent/hula_bbox.shp
data/spatial/hula_extent/hula_bbox.shx
environment.yml
figures/00_figures_here.txt
figures/fig_04.png
figures/fig_landscape_maps.png
figures/fig_moult_move.png
figures/fig_patch_duration_rrv.png
figures/fig_patch_processing_ppa.png
figures/fig_patch_switches.png
figures/fig_points_to_ssf.png
figures/fig_spm_01.png
figures/fig_spm_03.png
figures/fig_vis_selection.png
figures/helper_files/patch_points.qml
figures/helper_files/preproc_points.qml
holeybirds.Rproj
holeybirds.qgz
python_requirements.txt
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
scripts/00_get-longterm-ndvi.py
scripts/00_get-sentinel-ndvi.py
scripts/00_resample-chm.py
scripts/01_prepare-by-id.Rmd
scripts/02_preprocess-data.Rmd
scripts/03_swallow_movement.Rmd
scripts/04_residence-patch.Rmd
scripts/05_patch_metrics.Rmd
scripts/06_prep-patches-ssf.Rmd
scripts/07_real-alt-patches-vis.Rmd
scripts/spm_01_wing_gap_change.Rmd
scripts/spm_02_landscape.Rmd
scripts/spm_03_residence_patches.Rmd