Files in pratikunterwegs/patho-move-evol
Analysis code for the _pathomove_ model.
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
README.md
bash/copy_tex.sh
bash/install_snevo.sh
bash/main_job_maker_default.sh
bash/main_job_maker_global.sh
bash/main_job_maker_handling.sh
bash/main_job_maker_percent.sh
bash/main_job_maker_spatial.sh
bash/main_job_maker_sporadic.sh
bash/main_job_maker_threshold.sh
bash/main_job_maker_vertical.sh
bash/render_supplement.sh
data/00_data.txt
data/output/00_output_exists.txt
data/parameters/00_parameters.txt
data/parameters/parameters_2023-02-05_12_34_11_default.csv
data/parameters/parameters_2023-02-05_12_34_11_vertical.csv
data/parameters/parameters_2023-02-05_18_34_44_spatial.csv
data/parameters/parameters_2023-02-05_18_38_15_handling.csv
data/parameters/parameters_2023-02-06_17_42_24_global.csv
data/parameters/parameters_2023-02-06_17_43_01_percent.csv
data/parameters/parameters_2023-02-11_13_49_11_threshold.csv
data/parameters/parameters_2023-02-15_19_11_47_sporadic.csv
data/results/00_data.txt
figure-scripts/01_plot_ecol_consequences.Rmd
figure-scripts/02_plot_social_outcomes.Rmd
figure-scripts/03_plot_networks.Rmd
figure-scripts/04_plot_disease.Rmd
figure-scripts/05_plot_compare_parameters.Rmd
figure-scripts/06_plot_vertical_scenario.Rmd
figure-scripts/07_plot_sporadic.Rmd
figures/fig_disease.png
figures/fig_eco_evo_general.png
figures/fig_eco_evo_vertical.png
figures/fig_evo_intermediate.png
figures/fig_evo_strategy_default.png
figures/fig_model_landscape.png
figures/fig_model_landscape.svg
figures/fig_networks.png
figures/fig_schematic.svg
figures/fig_social_outcomes.png
patho-move-evol.Rproj
scripts/00_make_batch_script.R
scripts/00_run_cluster_simulations.Rmd
scripts/01_process_eco_evo_data.Rmd
scripts/02_process_networks.Rmd
scripts/03_sir_models.Rmd
scripts/0x_remove_bad_files.Rmd
scripts/do_sim_pathomove.R
supplement/.gitignore
supplement/_bookdown.yml
supplement/_output.yml
supplement/common.R
supplement/data/test_sim_output_data.Rds
supplement/figures/fig_cost_structure.png
supplement/figures/fig_default_chains.png
supplement/figures/fig_eco_compare_default.png
supplement/figures/fig_eco_compare_global.png
supplement/figures/fig_eco_compare_percent.png
supplement/figures/fig_eco_evo_alternatives.png
supplement/figures/fig_eco_evo_spatial.png
supplement/figures/fig_evo_change_percent_cost.png
supplement/figures/fig_evo_change_vertical.png
supplement/figures/fig_evo_strategy_sporadic.png
supplement/figures/fig_global_dispersal.png
supplement/figures/fig_infection_vertical.png
supplement/index.Rmd
supplement/latex/preamble.tex
supplement/oikos.csl
supplement/references.json
supplement/supplement.Rmd
