| annotateHits | Annotates Hits by Genomic Features |
| ComplexID | ComplexID: Integrated Hit Annotations and Random Walk of... |
| generatePlot | Produce Network Plot |
| getEnhancerTissues | Lists tissues available for enhancer regions |
| geteQTLTissues | Lists tissues available for eQTL sites |
| getPromoterTissues | Lists tissues available for promoter regions |
| hits | Example hits for ComplexID |
| hits.pheno | Example phenotype similarity matrix for ComplexID |
| runComplexID | Annotates Hits, Performs Random Walk, and Scores Genes |
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