Files in qiuyugong-aifi/QCBATCH
This packages is used to perform QC of bacth effect
.DS_Store
.Rbuildignore
.Rhistory
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
QCBATCH.Rproj
R/BatchDonors_DataAvailablity_Dotsplots.R
R/Batch_UMAP_Plot.R
R/Calculate_Density.R
R/Calculate_MeanSubtrated_Density.R
R/CellNumber_Batch_Boxplot.R
R/CellType_Composition_Heatmap.R
R/Density_Plot_Average.R
R/Density_Plot_by_Group.R
R/Fetch_Dataset_MetaData.R
R/GeneDistribution_Violin_Plot.R
R/MeanSubtracted_Density_Plot_by_Group.R
R/Merge_Dataset.R
R/Process_Dataset.R
R/StableGenes_PCA_plot.R
R/StableGenes_UMAP_plot.R
R/UMAP_Scatter_Plot.R
R/fetch_bridging_control.R
R/fileDescToDataframe.R
R/fileDescToDataframe_beta.R
R/subchunkify.R
codecov.yml
data/Stable_gene.rda
man/BatchDonors_DataAvailablity_Dotsplots.Rd
man/Batch_UMAP_Plot.Rd
man/Calculate_Density.Rd
man/Calculate_MeanSubtrated_Density.Rd
man/CellNumber_Batch_Boxplot.Rd
man/CellType_Composition_Heatmap.Rd
man/Density_Plot_Average.Rd
man/Density_Plot_by_Group.Rd
man/Fetch_Dataset_MetaData.Rd
man/GeneDistribution_Violin_Plot.Rd
man/MeanSubtracted_Density_Plot_by_Group.Rd
man/Merge_Dataset.Rd
man/Process_Dataset.Rd
man/StableGenes_PCA_plot.Rd
man/StableGenes_UMAP_plot.Rd
man/UMAP_Scatter_Plot.Rd
man/fetch_bridging_control.Rd
man/fileDescToDataframe.Rd
man/fileDescToDataframe_beta.Rd
man/subchunkify.Rd
tests/testthat.R
