Man pages for qleclerc/efficientspatial
Efficient Spatial Modelling of Epidemics
| calc_beta | Estimates beta from a given R0 (Raster) |
| calc_beta_shp | Estimates beta from a given R0 (Shapefile) |
| calc_dist_kernel | Calculates the spatial kernel values (Raster) |
| calc_dist_kernel_shp | Calculates the spatial kernel value (Shapefile) |
| calc_dist_mat | Calculates the distance matrix (Raster) |
| calc_dist_mat_shp | Calculates the distance matrix (Shapefile) |
| find_beta | Fits beta from one resolution to another (Raster) |
| find_beta_shp | Fits beta from one resolution to another (Shapefile) |
| load_contact_mat | Creates the age mixing matrix |
| load_raster | Loads required data for the simulation |
| load_shp | Loads all of the England Shapefiles, and the population data |
| multi_stoch | Runs multiple stochastic simulations (Raster) |
| multi_stoch_shp | Runs multiple stochastic simulations (Shapefile) |
| plot_simulation | Plots the SIR epidemic from the simulation |
| prep_simulation | Performs pre-calculations necessary for the simulation of an... |
| prep_simulation_shp | Performs pre-calculations necessary for the simulation of an... |
| run_simulation | Runs the spatial epidemic simulation (Raster) |
| run_simulation_shp | Runs the spatial epidemic simulation (Shapefile) |
