API for quantifish/rlsd
LSD Package
| Global functions | |
|---|---|
| .calc_starts | Source code |
| .dotfnames_to_sqrfnames | Source code |
| .filename_rm_ext | Source code |
| .get_dims_from_fnames | Source code |
| .get_samples | Source code |
| .get_samples_permute | Source code |
| .idx_col2rowm | Source code |
| .make_plot_data | Source code |
| .num_pars | Source code |
| .onAttach | Man page Source code |
| .paridx_fun | Source code |
| .pars_total_indexes | Source code |
| .read_csv_header | Source code |
| .reshape_sample | Source code |
| .unique_par | Source code |
| TACC | Man page Source code |
| calc_starts | Source code |
| check_pars | Source code |
| check_pars_first | Source code |
| check_pars_second | Source code |
| create_rules | Man page Source code |
| do_extract | Man page Source code |
| do_extract_old | Man page Source code |
| do_extract_ref | Man page Source code |
| do_plot | Man page Source code |
| do_plot_compare | Man page Source code |
| extract | Man page |
| extract,list-method | Man page |
| find_refs | Source code |
| idx_col2rowm | Source code |
| initialize,lsdOutput-method | Man page |
| is.stanfit | Source code |
| is.stanreg | Source code |
| looic | Man page Source code |
| lsdOutput-class | Man page |
| lsdSave | Man page Source code |
| num_pars | Source code |
| pars_total_indexes | Source code |
| parse_model_code | Man page Source code |
| plot_F | Man page Source code |
| plot_aw_cpue_lm | Man page |
| plot_biomass | Man page Source code |
| plot_catch | Man page Source code |
| plot_catch_rule | Man page Source code |
| plot_catch_save | Man page Source code |
| plot_compare_cpue | Man page Source code |
| plot_compare_lfs | Man page Source code |
| plot_compare_movement | Source code |
| plot_compare_q | Man page Source code |
| plot_compare_recruitment | Man page Source code |
| plot_compare_selectivity | Man page Source code |
| plot_compare_ssb | Man page Source code |
| plot_compare_vb | Man page Source code |
| plot_cpue | Man page Source code |
| plot_data_extent | Man page Source code |
| plot_dens | Man page Source code |
| plot_growth_increment | Man page |
| plot_growth_matrix | Man page |
| plot_handling_mortality | Man page Source code |
| plot_initial_numbers | Man page Source code |
| plot_lfs | Man page Source code |
| plot_lfs_resid | Man page |
| plot_lfs_resid2 | Man page |
| plot_maturation | Man page Source code |
| plot_mls | Man page Source code |
| plot_money_biomass | Man page Source code |
| plot_money_vuln_biomass | Man page Source code |
| plot_movement | Man page Source code |
| plot_mp_rules | Man page Source code |
| plot_numbers | Man page Source code |
| plot_offset_cpue | Man page Source code |
| plot_offset_cpue_lm | Man page Source code |
| plot_proj_numbers | Man page Source code |
| plot_puerulus | Man page Source code |
| plot_q | Man page Source code |
| plot_recruitment | Man page Source code |
| plot_recruitment_deviations | Man page Source code |
| plot_recruitment_size | Man page Source code |
| plot_refpoints | Man page Source code |
| plot_retro | Man page Source code |
| plot_rules | Man page Source code |
| plot_selectivity | Man page Source code |
| plot_sex_ratio | Man page Source code |
| plot_snail | Man page Source code |
| plot_ssb | Man page Source code |
| plot_ssb_AW_proj | Man page Source code |
| plot_ssb_recruitment | Man page Source code |
| plot_surplus_production | Man page Source code |
| plot_tag_residuals | Man page Source code |
| plot_total_biomass | Man page Source code |
| plot_vulnerable_biomass | Man page Source code |
| plot_vulnerable_reference_biomass | Man page Source code |
| plot_vulnref_AW | Man page Source code |
| plot_vulnref_AW_proj | Man page Source code |
| plot_vulnref_rel | Man page Source code |
| read_SSB | Man page Source code |
| read_catch | Man page Source code |
| read_stan_map | Man page Source code |
| read_stan_mcmc | Man page Source code |
| read_stan_var | Man page Source code |
| remove_empty_pars | Source code |
| show,lsdOutput-method | Man page |
| table_compare_parameters | Man page Source code |
| table_compare_residuals | Man page Source code |
| table_parameters | Man page Source code |
| table_residuals | Man page Source code |
| theme_lsd | Man page |
