Files in quantifish/rlsd

LSD Package

R/TACC.R R/create-rules.R R/do-extract-ref.R R/do-extract.R R/do-extract_old.R R/do-plot-compare.R R/do-plot.R R/extract-list.R R/lsdOutput-class.R R/lsdSave.R R/parse-model-code.R R/plot-F.R R/plot-biomass.R R/plot-catch.R R/plot-compare-refpoints.R R/plot-compare.R R/plot-cpue.R R/plot-data-extent.R R/plot-growth.R R/plot-handling-mortality.R R/plot-length-frequency.R R/plot-maturation.R R/plot-mls.R R/plot-movement.R R/plot-mp-rules.R R/plot-numbers.R R/plot-pars.R R/plot-projections.R R/plot-puerulus.R R/plot-q.R R/plot-recruitment.R R/plot-refpoints.R R/plot-retro.R R/plot-selectivity.R R/plot-sex-ratio.R R/plot-snail.R R/plot-surplus-production.R R/read-stan-map.R R/read-stan-mcmc.R R/read-stan-var.R R/table-parameters.R R/table-residuals.R R/theme-lsd.R R/zzz.R README.md build_install.R man/TACC.Rd man/create_rules.Rd man/do_extract.Rd man/do_extract_old.Rd man/do_extract_ref.Rd man/do_plot.Rd man/do_plot_compare.Rd man/dot-onAttach.Rd man/extract-list-method.Rd man/extract.Rd man/initialize-lsdOutput-method.Rd man/looic.Rd man/lsdOutput-class.Rd man/lsdSave.Rd man/parse_model_code.Rd man/plot_F.Rd man/plot_aw_cpue_lm.Rd man/plot_biomass.Rd man/plot_catch.Rd man/plot_catch_rule.Rd man/plot_catch_save.Rd man/plot_compare_cpue.Rd man/plot_compare_lfs.Rd man/plot_compare_q.Rd man/plot_compare_recruitment.Rd man/plot_compare_selectivity.Rd man/plot_compare_ssb.Rd man/plot_compare_vb.Rd man/plot_cpue.Rd man/plot_data_extent.Rd man/plot_dens.Rd man/plot_growth_increment.Rd man/plot_growth_matrix.Rd man/plot_handling_mortality.Rd man/plot_initial_numbers.Rd man/plot_lfs.Rd man/plot_lfs_resid.Rd man/plot_lfs_resid2.Rd man/plot_maturation.Rd man/plot_mls.Rd man/plot_money_biomass.Rd man/plot_money_vuln_biomass.Rd man/plot_movement.Rd man/plot_mp_rules.Rd man/plot_numbers.Rd man/plot_offset_cpue.Rd man/plot_offset_cpue_lm.Rd man/plot_proj_numbers.Rd man/plot_puerulus.Rd man/plot_q.Rd man/plot_recruitment.Rd man/plot_recruitment_deviations.Rd man/plot_recruitment_size.Rd man/plot_refpoints.Rd man/plot_retro.Rd man/plot_rules.Rd man/plot_selectivity.Rd man/plot_sex_ratio.Rd man/plot_snail.Rd man/plot_ssb.Rd man/plot_ssb_AW_proj.Rd man/plot_ssb_recruitment.Rd man/plot_surplus_production.Rd man/plot_tag_residuals.Rd man/plot_total_biomass.Rd man/plot_vulnerable_biomass.Rd man/plot_vulnerable_reference_biomass.Rd man/plot_vulnref_AW.Rd man/plot_vulnref_AW_proj.Rd man/plot_vulnref_rel.Rd man/read_SSB.Rd man/read_catch.Rd man/read_stan_map.Rd man/read_stan_mcmc.Rd man/read_stan_var.Rd man/show-lsdOutput-method.Rd man/table_compare_parameters.Rd man/table_compare_residuals.Rd man/table_parameters.Rd man/table_residuals.Rd man/theme_lsd.Rd tests/testthat.R tests/testthat/test-lsd.R update.R