Man pages for rahuldhodapkar/crules
Association Rule Learning Toolkit for Single Cells
| CalcCommPenaltyFromGMT | Compare communities list of lists to *.gmt symbol table from... |
| ColumnScaleSparseMatrix | Fast implementation to column scale a dgCMatrix to sum to 1 |
| DetectOverlappingCommunitiesSLPAw | Pure R implementation of SLPAw (Xie et. al 2011) |
| ForecastStates | Predict cell state transition graph using data simulated... |
| GenerateCellularRules | Generate association rules from original data E^0 |
| GenerateIncidenceMatrix | Create incidence matrix from dataset, wrapper function to... |
| GenerateIncidenceMatrixNonzero | Sets all nonzero entries to 1, creating incidence matrix. |
| GenerateIncidenceMatrixPercentile | Create incidence matrix from dataset, using column-wise... |
| GenerateMarkovTrace | Generate Markov trace for simulation of 'exp.mat' on the... |
| GenerateWalkMatrix | Creates a walk matrix from a set of rules. |
| InferSimulatedCellStates | Calculate new id vector (sigma) |
| ListenerModeOrRandom | Internal LISTENER function to be used in SLPAw algorithm. |
| ListenerProbWeighted | Internal LISTENER function to be used in SLPAw algorithm. |
| ListenerWeightedModeOrRandom | Internal LISTENER function to be used in SLPAw algorithm. |
| NewValsFromPVector | ngCmatric-specific manipulation, internal helper function to... |
| ProjectSimUMAP | Project a normalized simulated vector of cell expression onto... |
| RankRulesHypergraph | Generate representation of rule hypergraph from which to... |
| RowScaleSparseMatrix | Fast implementation to row scale a dgCMatrix to sum to 1 |
| TrimSmallComms | Small helper function to trim small communities from list of... |
| WalkCellState | Simulate the cell states using a walk matrix generated from... |
