| BuildNetManifest | Builds a network manifest from a list of Pnets |
| BuildNodeManifest | Builds a table describing a set of Pnodes |
| BuildTable | Builds the conditional probability table for a Pnode |
| calcExpTables | Calculate expected tables for a parameterized network |
| calcPnetLLike | Calculates the log likelihood for a set of data under a Pnet... |
| CompensatoryGadget | Shiny gadget for editinging compensatory pnodes |
| defaultAlphas | Reshapes alpha or beta vector based on rule and parents |
| DPCGadget | Shiny gadget for editinging compensatory pnodes |
| flattenStats | Flattens a statistic list into a numeric or character vector. |
| flog.try | Trys to execute an expression with errors logged. |
| GEMfit | Fits the parameters of a parameterized network using the GEM... |
| is.legal.name | Checks to see if names are valid for objects in warehouse. |
| isPnodeContinuous | Functions for handling continuous nodes. |
| maxAllTableParams | Find optimal parameters of Pnet or Pnode to match expected... |
| OffsetGadget | Shiny gadget for editinging (offset) conjuctive and... |
| Omega2Pnet | Constructs a parameterized network from an Omega matrix. |
| Peanut-package | Parameterized Bayesian Networks, Abstract Classes |
| Pnet | A Parameterized Bayesian network |
| Pnet2Omega | Constructs an Omega matrix from a parameterized network. |
| Pnet2Qmat | Makes an augmented Q-matrix from a collection of... |
| PnetAdjoin | Merges (or separates) two Pnets with common variables |
| Pnet-class | Class '"Pnet"' |
| PnetCompile | Compiles a Parameterized Bayesian Network |
| PnetFindNode | Finds nodes in a parameterized network. |
| PnetHub | Returns the name of the hub net if this is a spoke net. |
| PnetMakeStubNodes | Creates (or removes) references to nodes in a network |
| PnetName | Gets or Sets the name of a Netica network. |
| PnetPathname | Returns the path associated with a network. |
| PnetPnodes | Returns a list of Pnodes associated with a Pnet |
| PnetPriorWeight | Gets the weight to be associated with the prior table during... |
| PnetSerialize | Writes/restores network from a string. |
| PnetTitle | Gets the title or comments associated with a parameterized... |
| PnetWarehouse-class | Class '"PnetWarehouse"' |
| Pnode | A Parameterized Bayesian network node |
| PnodeBetas | Access the combination function slope parameters for a Pnode |
| Pnode-class | Class '"Pnode"' |
| PnodeEvidence | Accesses the value to which a given node has been... |
| PnodeLabels | Lists or changes the labels associated with a parameterize... |
| PnodeLink | Accesses the link function associated with a Pnode |
| PnodeLinkScale | Accesses the link function scale parameter associated with a... |
| PnodeLnAlphas | Access the combination function slope parameters for a Pnode |
| PnodeMin-class | A minimal Pnode class for use in interface construction. |
| PnodeName | Gets or sets name of a parameterized node. |
| PnodeParents | Gets or sets the parents of a parameterized node. |
| PnodeParentTvals | Fetches a list of numeric variables corresponding to parent... |
| PnodePostWeight | Fetches the posterior weight associated with a node |
| PnodeProbs | Gets or sets the conditional probability table associated... |
| PnodeQ | Accesses a state-wise Q-matrix associated with a Pnode |
| PnodeRules | Accesses the combination rules for a Pnode |
| PnodeStates | Accessor for states of a parameterized node. |
| PnodeStateTitles | Accessors for the titles and descriptions associated with... |
| PnodeStateValues | Accesses the numeric values associated with the state of a... |
| PnodeStats | Pnode Marginal Statistics |
| PnodeTitle | Gets the title or Description associated with a parameterized... |
| PnodeWarehouse-class | Class '"PnodeWarehouse"' |
| Qmat2Pnet | Makes or adjusts parameterized networks based on augmented... |
| RegressionGadget | Shiny gadget for editinging compensatory pnodes |
| Statistic | Key functions for the Statistics class |
| Statistic-class | Class '"Statistic"' |
| topsort | Topologically sorts the rows and columns of an Omega matrix |
| Warehouse | A cache for Pnets or Pnodes |
| WarehouseCopy | Copies and object in the warehouse |
| WarehouseManifest | Manipulates the manifest for a warehouse |
