Files in rashmihazarika/jDMR
A heuristic DMR caller for population-level WGBS data
.DS_Store
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/CfromFASTAv4.R
R/MethimputeReg.R
R/MethimputeRegTobedGraph.R
R/annotateDMRs.R
R/filterDMRmatrix.R
R/globFun.R
R/makeDMRmatrix.R
R/makeReg.R
R/makeRegScaffolds.R
R/runMethimpute.R
README.md
inst/extdata/Arabidopsis_thaliana.TAIR10.dna.chromosome.1.fa.gz
inst/extdata/Arabidopsis_thaliana.TAIR10.dna.chromosome.2.fa.gz
inst/extdata/Arabidopsis_thaliana.TAIR10.dna.chromosome.3.fa.gz
inst/extdata/Arabidopsis_thaliana.TAIR10.dna.chromosome.4.fa.gz
inst/extdata/Arabidopsis_thaliana.TAIR10.dna.chromosome.5.fa.gz
inst/extdata/listFiles1.fn
inst/extdata/listFiles2.fn
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_CHH.Rdata
jDMR.Rproj
man/CfromFASTAv4.Rd
man/annotateDMRs.Rd
man/filterDMRmatrix.Rd
man/makeDMRmatrix.Rd
man/makeReg.Rd
man/runMethimputeGrid.Rd
man/runMethimputeRegions.Rd
vignettes/jDMR-tutorial.Rmd
vignettes/jDMR-tutorial.pdf
