Man pages for raywoo32/modCluster
modCluster
| checkValidInput | Checks if input to modCluster is valid. If valid returns... |
| chooseBestGroups | Selects best groups by highest density metrics |
| clusterByModule | Controller function available to the user to display |
| edge_density | Modified igraph::edge_density to include weights |
| edgesData | Example data of edges in the sample graph |
| getAllPossibleGroups | Makes df containing all possible combined modules of length 2... |
| getChosenMods | Get df with module name, subgraph and density for the groups... |
| getModuleNames | Helper function that converts modules from string to vector |
| makeCommunities | Change igraph object properties (communities, membership) a... |
| makeLayout | Use igraph::mergecoords to make a layout with the chosen... |
| makeModuleGraphs | Make df with module name, subgraph and density |
| makeSortedCompare | Helper function to modCluster Combines df with modules and... |
| modClusterShiny | Run shiny app that shows and visualizes example |
| verticiesData | Example data of verticies in the sample graph |
| visualizeCommunities | Visualizes graph communities |
| visualizeGraph | Visualizes graph with gene names |
