Files in rcarragh/c212
Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

data/c212.FDR.data.txt

data/c212.trial.data.txt

data/c212.trial.interval.data1.txt

data/c212.trial.interval.data2.txt

man/c212.1a.interim.rd man/c212.1a.rd man/c212.BB.interim.rd man/c212.BB.rd man/c212.FDR.data.rd man/c212.Package.rd man/c212.bin.test.rd man/c212.convergence.diag.rd man/c212.err.cntrl.rd man/c212.fisher.test.rd man/c212.gen.initial.values.rd man/c212.global.sim.params.rd man/c212.hyper.params.rd man/c212.interim.1a.hier2.rd man/c212.interim.1a.hier3.rd man/c212.interim.BB.hier2.rd man/c212.interim.BB.hier3.rd man/c212.interim.MLE.rd man/c212.monitor.samples.rd man/c212.plot.eot.data.rd man/c212.plot.interim.data.rd man/c212.plot.samples.rd man/c212.pointmass.weights.rd man/c212.print.convergence.summary.rd man/c212.print.summary.stats.rd man/c212.ptheta.rd man/c212.sim.control.params.rd man/c212.summary.stats.rd man/c212.trial.data.rd man/c212.trial.interval.data1.rd man/c212.trial.interval.data2.rd man/c212BH.adjust.pvals.rd man/c212BH.rd man/c212BONF.rd man/c212DFDR.rd man/c212GBH.rd man/c212LSL.rd man/c212NOADJ.rd man/c212TST.rd man/c212ssBH.rd

paper/paper.bib

paper/paper.md

paper/vancouver-superscript.csl

src/c2121a.cpp

src/c2121a.h

src/c2121a_poisson_mc_hier2_lev0.cpp

src/c2121a_poisson_mc_hier2_lev0.h

src/c2121a_poisson_mc_hier2_lev1.cpp

src/c2121a_poisson_mc_hier2_lev1.h

src/c2121a_poisson_mc_hier3_lev0.cpp

src/c2121a_poisson_mc_hier3_lev0.h

src/c2121a_poisson_mc_hier3_lev1.cpp

src/c2121a_poisson_mc_hier3_lev1.h

src/c2121a_poisson_mc_hier3_lev2.cpp

src/c2121a_poisson_mc_hier3_lev2.h

src/c212BB.cpp

src/c212BB.h

src/c212BB_poisson_mc_hier2_lev0.cpp

src/c212BB_poisson_mc_hier2_lev0.h

src/c212BB_poisson_mc_hier2_lev1.cpp

src/c212BB_poisson_mc_hier2_lev1.h

src/c212BB_poisson_mc_hier3_lev0.cpp

src/c212BB_poisson_mc_hier3_lev0.h

src/c212BB_poisson_mc_hier3_lev1.cpp

src/c212BB_poisson_mc_hier3_lev1.h

src/c212BB_poisson_mc_hier3_lev2.cpp

src/c212BB_poisson_mc_hier3_lev2.h

src/c212_Rdefines.h

src/c212_exec.cpp

src/c212_exec.h

src/register.cpp

src/register.h

test/README

test/c212.1a.interim/changed_parameters/baseline/RAISED_AES

test/c212.1a.interim/changed_parameters/baseline/conv.dat

test/c212.1a.interim/changed_parameters/baseline/ptheta.dat

test/c212.1a.interim/changed_parameters/baseline/ptheta95.dat

test/c212.1a.interim/changed_parameters/baseline/summary.dat

test/c212.1a.interim/changed_parameters/check_test.bat

test/c212.1a.interim/changed_parameters/check_test.r

test/c212.1a.interim/changed_parameters/check_test.sh

test/c212.1a.interim/changed_parameters/cleanup.bat

test/c212.1a.interim/changed_parameters/cleanup.sh

test/c212.1a.interim/changed_parameters/data/interim_trial_data.dat

test/c212.1a.interim/changed_parameters/run.bat

test/c212.1a.interim/changed_parameters/run.sh

test/c212.1a.interim/changed_parameters/test/run.r

test/c212.1a.interim/default_parameters/baseline/RAISED_AES

test/c212.1a.interim/default_parameters/baseline/conv.dat

test/c212.1a.interim/default_parameters/baseline/ptheta.dat

test/c212.1a.interim/default_parameters/baseline/ptheta95.dat

test/c212.1a.interim/default_parameters/baseline/summary.dat

test/c212.1a.interim/default_parameters/check_test.bat

test/c212.1a.interim/default_parameters/check_test.r

test/c212.1a.interim/default_parameters/check_test.sh

test/c212.1a.interim/default_parameters/cleanup.bat

test/c212.1a.interim/default_parameters/cleanup.sh

test/c212.1a.interim/default_parameters/data/interim_trial_data.dat

test/c212.1a.interim/default_parameters/run.bat

test/c212.1a.interim/default_parameters/run.sh

test/c212.1a.interim/default_parameters/test/run.r

test/c212.1a.interim/initial_values/baseline/RAISED_AES

test/c212.1a.interim/initial_values/baseline/conv.dat

test/c212.1a.interim/initial_values/baseline/ptheta.dat

test/c212.1a.interim/initial_values/baseline/ptheta95.dat

test/c212.1a.interim/initial_values/baseline/summary.dat

test/c212.1a.interim/initial_values/check_test.bat

test/c212.1a.interim/initial_values/check_test.r

test/c212.1a.interim/initial_values/check_test.sh

test/c212.1a.interim/initial_values/cleanup.bat

test/c212.1a.interim/initial_values/cleanup.sh

test/c212.1a.interim/initial_values/data/interim_trial_data.dat

test/c212.1a.interim/initial_values/run.bat

test/c212.1a.interim/initial_values/run.sh

test/c212.1a.interim/initial_values/test/run.r

test/c212.1a.interim/single_chain/baseline/RAISED_AES

test/c212.1a.interim/single_chain/baseline/conv.dat

test/c212.1a.interim/single_chain/baseline/ptheta.dat

test/c212.1a.interim/single_chain/baseline/ptheta95.dat

test/c212.1a.interim/single_chain/baseline/summary.dat

test/c212.1a.interim/single_chain/check_test.bat

test/c212.1a.interim/single_chain/check_test.r

test/c212.1a.interim/single_chain/check_test.sh

test/c212.1a.interim/single_chain/cleanup.bat

test/c212.1a.interim/single_chain/cleanup.sh

test/c212.1a.interim/single_chain/data/interim_trial_data.dat

test/c212.1a.interim/single_chain/run.bat

test/c212.1a.interim/single_chain/run.sh

test/c212.1a.interim/single_chain/test/run.r

test/c212.1a/changed_global_params/baseline/RAISED_AES

test/c212.1a/changed_global_params/baseline/conv.dat

test/c212.1a/changed_global_params/baseline/ptheta.dat

test/c212.1a/changed_global_params/baseline/ptheta95.dat

test/c212.1a/changed_global_params/baseline/summary.dat

test/c212.1a/changed_global_params/check_test.bat

test/c212.1a/changed_global_params/check_test.r

test/c212.1a/changed_global_params/check_test.sh

test/c212.1a/changed_global_params/cleanup.bat

test/c212.1a/changed_global_params/cleanup.sh

test/c212.1a/changed_global_params/data/c212.trial.data.dat

test/c212.1a/changed_global_params/run.bat

test/c212.1a/changed_global_params/run.sh

test/c212.1a/changed_global_params/test/run.r

test/c212.1a/changed_parameters/baseline/RAISED_AES

test/c212.1a/changed_parameters/baseline/conv.dat

test/c212.1a/changed_parameters/baseline/ptheta.dat

test/c212.1a/changed_parameters/baseline/ptheta95.dat

test/c212.1a/changed_parameters/baseline/summary.dat

test/c212.1a/changed_parameters/check_test.bat

test/c212.1a/changed_parameters/check_test.r

test/c212.1a/changed_parameters/check_test.sh

test/c212.1a/changed_parameters/cleanup.bat

test/c212.1a/changed_parameters/cleanup.sh

test/c212.1a/changed_parameters/data/c212.trial.data.dat

test/c212.1a/changed_parameters/run.bat

test/c212.1a/changed_parameters/run.sh

test/c212.1a/changed_parameters/test/run.r

test/c212.1a/default_parameters/baseline/RAISED_AES

test/c212.1a/default_parameters/baseline/conv.dat

test/c212.1a/default_parameters/baseline/ptheta.dat

test/c212.1a/default_parameters/baseline/ptheta95.dat

test/c212.1a/default_parameters/baseline/summary.dat

test/c212.1a/default_parameters/check_test.bat

test/c212.1a/default_parameters/check_test.r

test/c212.1a/default_parameters/check_test.sh

test/c212.1a/default_parameters/cleanup.bat

test/c212.1a/default_parameters/cleanup.sh

test/c212.1a/default_parameters/data/c212.trial.data.dat

test/c212.1a/default_parameters/run.bat

test/c212.1a/default_parameters/run.sh

test/c212.1a/default_parameters/test/run.r

test/c212.1a/initial_values/baseline/RAISED_AES

test/c212.1a/initial_values/baseline/conv.dat

test/c212.1a/initial_values/baseline/ptheta.dat

test/c212.1a/initial_values/baseline/ptheta95.dat

test/c212.1a/initial_values/baseline/summary.dat

test/c212.1a/initial_values/check_test.bat

test/c212.1a/initial_values/check_test.r

test/c212.1a/initial_values/check_test.sh

test/c212.1a/initial_values/cleanup.bat

test/c212.1a/initial_values/cleanup.sh

test/c212.1a/initial_values/data/c212.trial.data.dat

test/c212.1a/initial_values/run.bat

test/c212.1a/initial_values/run.sh

test/c212.1a/initial_values/test/run.r

test/c212.1a/single_chain/baseline/RAISED_AES

test/c212.1a/single_chain/baseline/conv.dat

test/c212.1a/single_chain/baseline/ptheta.dat

test/c212.1a/single_chain/baseline/ptheta95.dat

test/c212.1a/single_chain/baseline/summary.dat

test/c212.1a/single_chain/check_test.bat

test/c212.1a/single_chain/check_test.r

test/c212.1a/single_chain/check_test.sh

test/c212.1a/single_chain/cleanup.bat

test/c212.1a/single_chain/cleanup.sh

test/c212.1a/single_chain/data/c212.trial.data.dat

test/c212.1a/single_chain/run.bat

test/c212.1a/single_chain/run.sh

test/c212.1a/single_chain/test/run.r

test/c212.BB.interim/changed_pm_weights/baseline/RAISED_AES

test/c212.BB.interim/changed_pm_weights/baseline/conv.dat

test/c212.BB.interim/changed_pm_weights/baseline/ptheta.dat

test/c212.BB.interim/changed_pm_weights/baseline/ptheta80.dat

test/c212.BB.interim/changed_pm_weights/baseline/summary.dat

test/c212.BB.interim/changed_pm_weights/check_test.bat

test/c212.BB.interim/changed_pm_weights/check_test.r

test/c212.BB.interim/changed_pm_weights/check_test.sh

test/c212.BB.interim/changed_pm_weights/cleanup.bat

test/c212.BB.interim/changed_pm_weights/cleanup.sh

test/c212.BB.interim/changed_pm_weights/data/interim_trial_data.dat

test/c212.BB.interim/changed_pm_weights/run.bat

test/c212.BB.interim/changed_pm_weights/run.sh

test/c212.BB.interim/changed_pm_weights/test/run.r

test/c212.BB.interim/changed_sim_params/baseline/RAISED_AES

test/c212.BB.interim/changed_sim_params/baseline/conv.dat

test/c212.BB.interim/changed_sim_params/baseline/ptheta.dat

test/c212.BB.interim/changed_sim_params/baseline/ptheta80.dat

test/c212.BB.interim/changed_sim_params/baseline/summary.dat

test/c212.BB.interim/changed_sim_params/check_test.bat

test/c212.BB.interim/changed_sim_params/check_test.r

test/c212.BB.interim/changed_sim_params/check_test.sh

test/c212.BB.interim/changed_sim_params/cleanup.bat

test/c212.BB.interim/changed_sim_params/cleanup.sh

test/c212.BB.interim/changed_sim_params/data/interim_trial_data.dat

test/c212.BB.interim/changed_sim_params/run.bat

test/c212.BB.interim/changed_sim_params/run.sh

test/c212.BB.interim/changed_sim_params/test/run.r

test/c212.BB.interim/default_parameters/baseline/RAISED_AES

test/c212.BB.interim/default_parameters/baseline/conv.dat

test/c212.BB.interim/default_parameters/baseline/ptheta.dat

test/c212.BB.interim/default_parameters/baseline/ptheta80.dat

test/c212.BB.interim/default_parameters/baseline/summary.dat

test/c212.BB.interim/default_parameters/check_test.bat

test/c212.BB.interim/default_parameters/check_test.r

test/c212.BB.interim/default_parameters/check_test.sh

test/c212.BB.interim/default_parameters/cleanup.bat

test/c212.BB.interim/default_parameters/cleanup.sh

test/c212.BB.interim/default_parameters/data/interim_trial_data.dat

test/c212.BB.interim/default_parameters/run.bat

test/c212.BB.interim/default_parameters/run.sh

test/c212.BB.interim/default_parameters/test/run.r

test/c212.BB.interim/initial_values/baseline/RAISED_AES

test/c212.BB.interim/initial_values/baseline/conv.dat

test/c212.BB.interim/initial_values/baseline/ptheta.dat

test/c212.BB.interim/initial_values/baseline/ptheta80.dat

test/c212.BB.interim/initial_values/baseline/summary.dat

test/c212.BB.interim/initial_values/check_test.bat

test/c212.BB.interim/initial_values/check_test.r

test/c212.BB.interim/initial_values/check_test.sh

test/c212.BB.interim/initial_values/cleanup.bat

test/c212.BB.interim/initial_values/cleanup.sh

test/c212.BB.interim/initial_values/data/interim_trial_data.dat

test/c212.BB.interim/initial_values/run.bat

test/c212.BB.interim/initial_values/run.sh

test/c212.BB.interim/initial_values/test/run.r

test/c212.BB.interim/single_chain/baseline/RAISED_AES

test/c212.BB.interim/single_chain/baseline/conv.dat

test/c212.BB.interim/single_chain/baseline/ptheta.dat

test/c212.BB.interim/single_chain/baseline/ptheta80.dat

test/c212.BB.interim/single_chain/baseline/summary.dat

test/c212.BB.interim/single_chain/check_test.bat

test/c212.BB.interim/single_chain/check_test.r

test/c212.BB.interim/single_chain/check_test.sh

test/c212.BB.interim/single_chain/cleanup.bat

test/c212.BB.interim/single_chain/cleanup.sh

test/c212.BB.interim/single_chain/data/interim_trial_data.dat

test/c212.BB.interim/single_chain/run.bat

test/c212.BB.interim/single_chain/run.sh

test/c212.BB.interim/single_chain/test/run.r

test/c212.BB/changed_global_sim_params/baseline/RAISED_AES

test/c212.BB/changed_global_sim_params/baseline/conv.dat

test/c212.BB/changed_global_sim_params/baseline/ptheta.dat

test/c212.BB/changed_global_sim_params/baseline/ptheta80.dat

test/c212.BB/changed_global_sim_params/baseline/summary.dat

test/c212.BB/changed_global_sim_params/check_test.bat

test/c212.BB/changed_global_sim_params/check_test.r

test/c212.BB/changed_global_sim_params/check_test.sh

test/c212.BB/changed_global_sim_params/cleanup.bat

test/c212.BB/changed_global_sim_params/cleanup.sh

test/c212.BB/changed_global_sim_params/data/c212.trial.data.dat

test/c212.BB/changed_global_sim_params/run.bat

test/c212.BB/changed_global_sim_params/run.sh

test/c212.BB/changed_global_sim_params/test/run.r

test/c212.BB/changed_individual_sim_params/baseline/RAISED_AES

test/c212.BB/changed_individual_sim_params/baseline/conv.dat

test/c212.BB/changed_individual_sim_params/baseline/ptheta.dat

test/c212.BB/changed_individual_sim_params/baseline/ptheta80.dat

test/c212.BB/changed_individual_sim_params/baseline/summary.dat

test/c212.BB/changed_individual_sim_params/check_test.bat

test/c212.BB/changed_individual_sim_params/check_test.r

test/c212.BB/changed_individual_sim_params/check_test.sh

test/c212.BB/changed_individual_sim_params/cleanup.bat

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test/c212.BB/changed_individual_sim_params/data/c212.trial.data.dat

test/c212.BB/changed_individual_sim_params/run.bat

test/c212.BB/changed_individual_sim_params/run.sh

test/c212.BB/changed_individual_sim_params/test/run.r

test/c212.BB/changed_pm_weights/baseline/RAISED_AES

test/c212.BB/changed_pm_weights/baseline/conv.dat

test/c212.BB/changed_pm_weights/baseline/ptheta.dat

test/c212.BB/changed_pm_weights/baseline/ptheta80.dat

test/c212.BB/changed_pm_weights/baseline/summary.dat

test/c212.BB/changed_pm_weights/check_test.bat

test/c212.BB/changed_pm_weights/check_test.r

test/c212.BB/changed_pm_weights/check_test.sh

test/c212.BB/changed_pm_weights/cleanup.bat

test/c212.BB/changed_pm_weights/cleanup.sh

test/c212.BB/changed_pm_weights/data/c212.trial.data.dat

test/c212.BB/changed_pm_weights/run.bat

test/c212.BB/changed_pm_weights/run.sh

test/c212.BB/changed_pm_weights/test/run.r

test/c212.BB/default_parameters/baseline/RAISED_AES

test/c212.BB/default_parameters/baseline/conv.dat

test/c212.BB/default_parameters/baseline/ptheta.dat

test/c212.BB/default_parameters/baseline/ptheta80.dat

test/c212.BB/default_parameters/baseline/summary.dat

test/c212.BB/default_parameters/check_test.bat

test/c212.BB/default_parameters/check_test.r

test/c212.BB/default_parameters/check_test.sh

test/c212.BB/default_parameters/cleanup.bat

test/c212.BB/default_parameters/cleanup.sh

test/c212.BB/default_parameters/data/c212.trial.data.dat

test/c212.BB/default_parameters/run.bat

test/c212.BB/default_parameters/run.sh

test/c212.BB/default_parameters/test/run.r

test/c212.BB/initial_values/baseline/RAISED_AES

test/c212.BB/initial_values/baseline/conv.dat

test/c212.BB/initial_values/baseline/ptheta.dat

test/c212.BB/initial_values/baseline/ptheta80.dat

test/c212.BB/initial_values/baseline/summary.dat

test/c212.BB/initial_values/check_test.bat

test/c212.BB/initial_values/check_test.r

test/c212.BB/initial_values/check_test.sh

test/c212.BB/initial_values/cleanup.bat

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test/c212.BB/initial_values/data/c212.trial.data.dat

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test/c212.BB/initial_values/test/run.r

test/c212.BB/single_chain/baseline/RAISED_AES

test/c212.BB/single_chain/baseline/conv.dat

test/c212.BB/single_chain/baseline/ptheta.dat

test/c212.BB/single_chain/baseline/ptheta80.dat

test/c212.BB/single_chain/baseline/summary.dat

test/c212.BB/single_chain/check_test.bat

test/c212.BB/single_chain/check_test.r

test/c212.BB/single_chain/check_test.sh

test/c212.BB/single_chain/cleanup.bat

test/c212.BB/single_chain/cleanup.sh

test/c212.BB/single_chain/data/c212.trial.data.dat

test/c212.BB/single_chain/run.bat

test/c212.BB/single_chain/run.sh

test/c212.BB/single_chain/test/run.r

test/check_tests.bat

test/check_tests.sh

test/cleanup_all.bat

test/cleanup_all.sh

test/demos/demo_c212_1a.r test/demos/demo_c212_1a_interim.r test/demos/demo_c212_BB.r test/demos/demo_c212_BB_interim.r test/demos/demo_err_cntrl.r

test/error_control/baseline/bh.10.dat

test/error_control/baseline/bh.dat

test/error_control/baseline/bonf.10.dat

test/error_control/baseline/bonf.dat

test/error_control/baseline/dfdr.10.dat

test/error_control/baseline/dfdr.dat

test/error_control/baseline/gbh.10.dat

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test/error_control/baseline/noadj.10.dat

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test/error_control/baseline/ssbh.10.dat

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test/error_control/check_test.bat

test/error_control/check_test.r

test/error_control/check_test.sh

test/error_control/cleanup.bat

test/error_control/cleanup.sh

test/error_control/run.bat

test/error_control/run.sh

test/error_control/test/run.r

test/run_all_tests.bat

test/run_all_tests.sh

rcarragh/c212 documentation built on Nov. 8, 2024, 10:37 p.m.

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rcarragh/c212
Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)

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Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)

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rcarragh/c212 Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)

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rcarragh/c212
Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)

Files in rcarragh/c212
Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)