Man pages for rcfgroup/clinconcept
Tools for Loading and Querying Clinical Concept Dictionaries
| build_concept_tables | Builds chosen dictionary concept tables in a database. Uses... |
| cc_debug | Utility function which switches on/off debugging messages and... |
| cc_disconnect | Utility function used to disconnect database connection |
| cc_from_file | This function will read a JSON file containing options used... |
| cc_from_list | Create a clinical dictionary object using a list of options.... |
| cc_is_available | Utility function to determine if clinical dictionary... |
| cc_reconnect | Utility function to reconnect if clinical dictionary... |
| create_query_params_for_children_from_hierarchy | Internal function used to create query parameters for getting... |
| create_query_params_for_parents_from_hierarchy | Internal function used to create query parameters for getting... |
| disable_case_sensitivity | Disable SQLite database query case-sensitivity |
| enable_case_sensitivity | Enable SQLite database query case-sensitivity |
| execute_sql_statements | Utility function which loops through a vector of SQL... |
| extract_relations_from_dag | Internal function used to get relations from a diacyclic... |
| extract_relations_from_hierarchy | Internal function used to get relations from a hierarchical... |
| find_matching_file | Find file matching regular expression in directory. Used to... |
| get_child_codes | Get child codes from the supplied clinical dictionary |
| get_ctable_code_field | Get dictionary-specific concept code field name |
| get_ctable_name | Get dictionary-specific concept table name |
| get_ctable_term_field | Get dictionary-specific concept term field name |
| get_dot_position | Internal function which gets the position of first dot in... |
| get_parent_codes | Get parent codes from the supplied clinical dictionary |
| get_ptable_code_field | Get dictionary-specific parent table code field name |
| get_ptable_name | Get dictionary-specific parent table name |
| get_ptable_parent_field | Get dictionary-specific parent table parent code field name |
| get_relation_codes | Internal recursive function used to get all relation codes... |
| get_relationships | Get child/parent pairs in a data.frame for a specific code |
| is_code_present | Determine if a code is present in the supplied clinical... |
| load_sql_statements_from_file | Utility function which reads SQL statements from a file and... |
| search_concepts | Search clinical codes in the specified dictionary using dplyr... |
| test_mysql | Utility function which switches on/off mysql testing |
| write_table_from_file | Wrapper function which simplifies reading a delimited file... |
