Files in reconhub/epitrix
Small Helpers and Tricks for Epidemics Analysis
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/render_readme.yml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/clean_labels.R
R/estimate_incubation.R
R/final_size.R
R/fit_discrete.R
R/gamma_tools.R
R/hash_names.R
R/r_to_R0_Wallinga_Lipsitch.R
R/sim_linelist.R
README.Rmd
README.md
README_files/figure-markdown_github/fit_i-1.png
README_files/figure-markdown_github/sample_R0-1.png
README_files/figure-markdown_github/si-1.png
README_files/figure-markdown_github/unnamed-chunk-4-1.png
README_files/figure-markdown_github/unnamed-chunk-5-1.png
codecov.yml
cran-comments.md
docs/CONDUCT.html
docs/LICENSE
docs/LICENSE-text.html
docs/articles/epitrix.html
docs/articles/estimate_incubation.html
docs/articles/figs-overview/fit_i-1.png
docs/articles/figs-overview/sample_R0-1.png
docs/articles/figs-overview/si-1.png
docs/articles/figs-overview/unnamed-chunk-4-1.png
docs/articles/figs-overview/unnamed-chunk-5-1.png
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/index_files/figure-html/fit_i-1.png
docs/index_files/figure-html/sample_R0-1.png
docs/index_files/figure-html/si-1.png
docs/index_files/figure-html/unnamed-chunk-4-1.png
docs/index_files/figure-html/unnamed-chunk-5-1.png
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/clean_labels.html
docs/reference/empirical_incubation_dist.html
docs/reference/fit_disc_gamma.html
docs/reference/fit_gamma_incubation_dist.html
docs/reference/gamma_tools.html
docs/reference/hash_names.html
docs/reference/index.html
docs/reference/r2R0-1.png
docs/reference/r2R0-3.png
docs/reference/r2R0-5.png
docs/reference/r2R0.html
logo/logo.png
logo/logo.svg
man/AR2R0.Rd
man/R02AR.Rd
man/R02herd_immunity_threshold.Rd
man/clean_labels.Rd
man/empirical_incubation_dist.Rd
man/figures/README-fit_i-1.png
man/figures/README-sample_R0-1.png
man/figures/README-si-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/fit_disc_gamma.Rd
man/fit_gamma_incubation_dist.Rd
man/gamma_tools.Rd
man/hash_names.Rd
man/r2R0.Rd
man/sim_linelist.Rd
tests/testthat.R
tests/testthat/_snaps/fit_discrete.md
tests/testthat/_snaps/hash_names.md
tests/testthat/_snaps/r_to_R0.md
tests/testthat/test_estimate_incubation.R
tests/testthat/test_final_size.R
tests/testthat/test_fit_discrete.R
tests/testthat/test_gamma.R
tests/testthat/test_hash_names.R
tests/testthat/test_r_to_R0.R
tests/testthat/test_rename.R
tests/testthat/test_sim_linelist.R
vignettes/epitrix.Rmd
vignettes/estimate_incubation.Rmd
vignettes/figs-overview/fit_i-1.png
vignettes/figs-overview/sample_R0-1.png
vignettes/figs-overview/si-1.png
vignettes/figs-overview/unnamed-chunk-4-1.png
vignettes/figs-overview/unnamed-chunk-5-1.png
