Man pages for reichlab/cdcForecastUtils
Utility functions for CDC forecasts
| arrange_entry | Arrange an entry for consistency |
| arrange_rows | Arrange the rows of the file |
| binned_distribution_quantile | Find quantiles of a binned distribution |
| categorical_samples_to_binned_distribution | From vector of categorical samples, create data frame of bin... |
| cdcForecastUtils | cdcForecastUtils - Utility functions for CDC forecasts |
| date_start_and_end_to_date_seq | Compute the sequence of dates in CDCEpi format from the start... |
| download_and_preprocess_flu_data | Download and preprocess the latest CDC flu data, both... |
| download_and_preprocess_state_flu_data | Download and preprocess the latest CDC flu data, state-level |
| fetch_delphi_data_multi_issue | Fetch and combine data from the Delphi Epidata API |
| generate_csv_from_submission_df | Create csv file suitable for submission |
| generate_point_forecast | Generate a point forecast from probabilistic forecast |
| generate_point_forecasts | Generate point forecasts for all locations and targets |
| get_below_baseline_idx | Compute first week when incidence falls below baseline and... |
| get_current_date_from_flu_data | Get current epidemic week from flu data |
| get_current_time_in_date_seq | Get index of epidemic week within a sequence of epidemic... |
| get_ili_baseline | Get the ILI baseline for a combination of region and season |
| get_required_forecast_horizon | How many weeks ahead are required to forecast specified... |
| get_standard_location_code | Convert a location name to standardized name as given here:... |
| get_targets_regions | Save submitted targets/locations of a file |
| get_time_from_start_of_season | Compute the time from the start of season |
| get_viz_from_submission_df | Compute the sequence of dates in CDCEpi format from the start... |
| internal_logscore | Create a data frame containing a row with a log score column... |
| multi_trajectories_to_binned_distributions | Convert a collection of matrices of sampled trajectories for... |
| numeric_samples_to_binned_distribution | From a vector of numeric samples, create data frame of bin... |
| plot_trajectories_and_intervals | Plot trajectories and intervals |
| read_entry | Read in a csv entry file |
| sanitize_entry | Sanitize a csv entry file |
| standardize_targets | Convert targets to standardize form |
| trajectories_to_binned_distributions | Convert a matrix of sampled trajectories to binned... |
| verify_bins | Verify bins are correct |
| verify_colnames | Verify the column names of an entry |
| verify_entry | Verify entry stored as an R data.frame |
| verify_entry_file | Verify an entry file |
| verify_filename | Verifies appropriate filename structure |
| verify_locations | Verify the locations |
| verify_point | Verify validity of point predictions |
| verify_probabilities | Verify the entry probabilities |
| verify_targets | Verify targets are correct |
| verify_types | Verify types are correct |
| write_sanitized_file | Write a sanitized file |
