Files in reichlab/cdcfluutils
Utility functions for CDC flu forecasts for team Kernel of Truth
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/GPthingy-utils.R
R/backfill-utils.R
R/cdcfluutils-package.R
R/data-download-utils.R
R/data.R
R/datetime-utils.R
R/kcde-utils.R
R/kde-utils.R
R/location-utils.R
R/math-utils.R
R/plot-utils.R
R/predx-utils.R
R/sarima-utils.R
R/scoring-utils.R
R/stacking-utils.R
R/utils.R
data-processing/save-clean-flu-data.R
data-processing/save-flu-baseline-file.R
data-processing/save-unrevised-data.R
data-raw/flu_data.csv
data-raw/flu_onset_baselines_with_imputations.csv
data-raw/region-prediction-template-EW53.csv
data-raw/region-prediction-template.csv
data/flu_data.rdata
data/flu_onset_baselines.rdata
data/historical_vars_regional.RDS
data/historical_vars_state.RDS
data/nat_reg_flu_data_with_backfill.rdata
data/state_flu_data.rdata
data/state_local_flu_data_with_backfill.rdata
estimation/region-kde/check-kde-files.R
estimation/region-kde/check_all_files.pdf
estimation/region-kde/create-current-season-kde-entry-files.R
estimation/region-kde/fits/kde-National-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region1-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region10-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region2-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region3-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region4-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region5-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region6-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region7-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region8-fit-prospective-2019-2020.rds
estimation/region-kde/fits/kde-Region9-fit-prospective-2019-2020.rds
estimation/state-kcdetd/create-current-season-kcde-entry-files.R
estimation/state-kcdetd/fits/ kcde_fit_Alabama
estimation/state-kcdetd/fits/ kcde_fit_Alaska
estimation/state-kcdetd/fits/ kcde_fit_Arizona
estimation/state-kcdetd/fits/ kcde_fit_Arkansas
estimation/state-kcdetd/fits/ kcde_fit_California
estimation/state-kcdetd/fits/ kcde_fit_Colorado
estimation/state-kcdetd/fits/ kcde_fit_Connecticut
estimation/state-kcdetd/fits/ kcde_fit_Delaware
estimation/state-kcdetd/fits/ kcde_fit_District of Columbia
estimation/state-kcdetd/fits/ kcde_fit_Florida
estimation/state-kcdetd/fits/ kcde_fit_Georgia
estimation/state-kcdetd/fits/ kcde_fit_Hawaii
estimation/state-kcdetd/fits/ kcde_fit_Idaho
estimation/state-kcdetd/fits/ kcde_fit_Illinois
estimation/state-kcdetd/fits/ kcde_fit_Indiana
estimation/state-kcdetd/fits/ kcde_fit_Iowa
estimation/state-kcdetd/fits/ kcde_fit_Kansas
estimation/state-kcdetd/fits/ kcde_fit_Kentucky
estimation/state-kcdetd/fits/ kcde_fit_Louisiana
estimation/state-kcdetd/fits/ kcde_fit_Maine
estimation/state-kcdetd/fits/ kcde_fit_Maryland
estimation/state-kcdetd/fits/ kcde_fit_Massachusetts
estimation/state-kcdetd/fits/ kcde_fit_Michigan
estimation/state-kcdetd/fits/ kcde_fit_Minnesota
estimation/state-kcdetd/fits/ kcde_fit_Mississippi
estimation/state-kcdetd/fits/ kcde_fit_Missouri
estimation/state-kcdetd/fits/ kcde_fit_Montana
estimation/state-kcdetd/fits/ kcde_fit_Nebraska
estimation/state-kcdetd/fits/ kcde_fit_Nevada
estimation/state-kcdetd/fits/ kcde_fit_New Hampshire
estimation/state-kcdetd/fits/ kcde_fit_New Jersey
estimation/state-kcdetd/fits/ kcde_fit_New Mexico
estimation/state-kcdetd/fits/ kcde_fit_New York
estimation/state-kcdetd/fits/ kcde_fit_New York City
estimation/state-kcdetd/fits/ kcde_fit_North Carolina
estimation/state-kcdetd/fits/ kcde_fit_North Dakota
estimation/state-kcdetd/fits/ kcde_fit_Ohio
estimation/state-kcdetd/fits/ kcde_fit_Oklahoma
estimation/state-kcdetd/fits/ kcde_fit_Oregon
estimation/state-kcdetd/fits/ kcde_fit_Pennsylvania
estimation/state-kcdetd/fits/ kcde_fit_Puerto Rico
estimation/state-kcdetd/fits/ kcde_fit_Rhode Island
estimation/state-kcdetd/fits/ kcde_fit_South Carolina
estimation/state-kcdetd/fits/ kcde_fit_South Dakota
estimation/state-kcdetd/fits/ kcde_fit_Tennessee
estimation/state-kcdetd/fits/ kcde_fit_Texas
estimation/state-kcdetd/fits/ kcde_fit_Utah
estimation/state-kcdetd/fits/ kcde_fit_Vermont
estimation/state-kcdetd/fits/ kcde_fit_Virgin Islands
estimation/state-kcdetd/fits/ kcde_fit_Virginia
estimation/state-kcdetd/fits/ kcde_fit_Washington
estimation/state-kcdetd/fits/ kcde_fit_West Virginia
estimation/state-kcdetd/fits/ kcde_fit_Wisconsin
estimation/state-kcdetd/fits/ kcde_fit_Wyoming
estimation/state-kcdetd/fits/ kcde_fit_ma
estimation/state-kcdetd/fits/kcde_fit_
estimation/state-kcdetd/fits/kcde_fit_Alabama
estimation/state-kcdetd/fits/kcde_fit_ak
estimation/state-kcdetd/fits/kcde_fit_al
estimation/state-kcdetd/fits/kcde_fit_ar
estimation/state-kcdetd/fits/kcde_fit_az
estimation/state-kcdetd/fits/kcde_fit_ca
estimation/state-kcdetd/fits/kcde_fit_co
estimation/state-kcdetd/fits/kcde_fit_ct
estimation/state-kcdetd/fits/kcde_fit_dc
estimation/state-kcdetd/fits/kcde_fit_de
estimation/state-kcdetd/fits/kcde_fit_fl
estimation/state-kcdetd/fits/kcde_fit_ga
estimation/state-kcdetd/fits/kcde_fit_gu
estimation/state-kcdetd/fits/kcde_fit_hi
estimation/state-kcdetd/fits/kcde_fit_ia
estimation/state-kcdetd/fits/kcde_fit_id
estimation/state-kcdetd/fits/kcde_fit_il
estimation/state-kcdetd/fits/kcde_fit_in
estimation/state-kcdetd/fits/kcde_fit_jfk
estimation/state-kcdetd/fits/kcde_fit_ks
estimation/state-kcdetd/fits/kcde_fit_ky
estimation/state-kcdetd/fits/kcde_fit_la
estimation/state-kcdetd/fits/kcde_fit_ma
estimation/state-kcdetd/fits/kcde_fit_md
estimation/state-kcdetd/fits/kcde_fit_me
estimation/state-kcdetd/fits/kcde_fit_mi
estimation/state-kcdetd/fits/kcde_fit_mn
estimation/state-kcdetd/fits/kcde_fit_mo
estimation/state-kcdetd/fits/kcde_fit_mp
estimation/state-kcdetd/fits/kcde_fit_ms
estimation/state-kcdetd/fits/kcde_fit_mt
estimation/state-kcdetd/fits/kcde_fit_nc
estimation/state-kcdetd/fits/kcde_fit_nd
estimation/state-kcdetd/fits/kcde_fit_ne
estimation/state-kcdetd/fits/kcde_fit_nh
estimation/state-kcdetd/fits/kcde_fit_nj
estimation/state-kcdetd/fits/kcde_fit_nm
estimation/state-kcdetd/fits/kcde_fit_nv
estimation/state-kcdetd/fits/kcde_fit_ny_minus_jfk
estimation/state-kcdetd/fits/kcde_fit_oh
estimation/state-kcdetd/fits/kcde_fit_ok
estimation/state-kcdetd/fits/kcde_fit_or
estimation/state-kcdetd/fits/kcde_fit_pa
estimation/state-kcdetd/fits/kcde_fit_pr
estimation/state-kcdetd/fits/kcde_fit_ri
estimation/state-kcdetd/fits/kcde_fit_sc
estimation/state-kcdetd/fits/kcde_fit_sd
estimation/state-kcdetd/fits/kcde_fit_tn
estimation/state-kcdetd/fits/kcde_fit_tx
estimation/state-kcdetd/fits/kcde_fit_ut
estimation/state-kcdetd/fits/kcde_fit_va
estimation/state-kcdetd/fits/kcde_fit_vi
estimation/state-kcdetd/fits/kcde_fit_vt
estimation/state-kcdetd/fits/kcde_fit_wa
estimation/state-kcdetd/fits/kcde_fit_wi
estimation/state-kcdetd/fits/kcde_fit_wv
estimation/state-kcdetd/fits/kcde_fit_wy
estimation/state-sarimatd/create-current-season-sarima-entry-files.R
make-submission-files/make-GPthingy-submission-file/GPthingy.stan
make-submission-files/make-GPthingy-submission-file/assemble_GPthingy_data.R
make-submission-files/make-GPthingy-submission-file/mcmc_samples_to_predx.R
make-submission-files/make-GPthingy-submission-file/predict_GPthingy.R
make-submission-files/make-GPthingy-submission-file/submit_cluster_job_predict.R
make-submission-files/make-regional-kcde-submission-files.R
make-submission-files/make-regional-sarima-submission-files.R
make-submission-files/make_submission_plots.R
make-submission-files/run-make-sarima-kcde-scripts.R
man/ILI_revision_tables.Rd
man/assemble_predictions.Rd
man/assemble_stacking_inputs.Rd
man/calc_median_from_binned_probs.Rd
man/cdcfluutils.Rd
man/compute_competition_log_score.Rd
man/create_ILI_revision_tables.Rd
man/download_and_preprocess_flu_data.Rd
man/download_and_preprocess_hosp_data.Rd
man/download_and_preprocess_state_flu_data.Rd
man/fetch_delphi_data_multi_issue.Rd
man/first_season_week_below_baseline.Rd
man/fit_kde_log_peak_week_inc.Rd
man/fit_kde_onset_week.Rd
man/fit_kde_peak_week.Rd
man/fit_kde_weekly_inc.Rd
man/fit_kernel_smoothed_stacked_model_fixed_bw.Rd
man/fit_region_kdes.Rd
man/fit_region_sarima.Rd
man/fit_stacked_model.Rd
man/fit_unregularized_stacked_model.Rd
man/flu_data.Rd
man/flu_onset_baselines.Rd
man/get_inc_bin.Rd
man/get_num_MMWR_weeks_in_first_season_year.Rd
man/get_num_MMWR_weeks_in_year.Rd
man/get_observed_seasonal_quantities.Rd
man/get_official_observed_seasonal_quantities.Rd
man/get_onset_baseline.Rd
man/get_onset_week.Rd
man/get_partially_revised_ilinet.Rd
man/get_submission_one_region_via_trajectory_simulation.Rd
man/historical_vars_regional.Rd
man/logspace_add.Rd
man/logspace_sub.Rd
man/logspace_sub_matrix_rows.Rd
man/logspace_sum.Rd
man/logspace_sum_matrix_rows.Rd
man/make_kde_region_prediction.Rd
man/make_one_kde_prediction_file.Rd
man/make_predictions_plots.Rd
man/merge_predx_samples.Rd
man/mmwr_week_to_season.Rd
man/mmwr_week_to_season_week.Rd
man/move_k_week_ahead.Rd
man/my_plot_weekahead.Rd
man/nat_reg_flu_data_with_backfill.Rd
man/pick_week.Rd
man/predict_kde_log_peak_week_inc.Rd
man/predict_kde_log_weekly_inc.Rd
man/predict_kde_onset_week.Rd
man/predict_kde_peak_week.Rd
man/predict_region_kde.Rd
man/predx_to_submission_df.Rd
man/preprocess_and_augment_trajectory_samples.Rd
man/preprocess_reg_data_for_GPthingy_stan.Rd
man/rRevisedILI.Rd
man/rRevisedILI_cached.Rd
man/rRevisedILI_fast.Rd
man/sample_predictive_trajectories_arima_wrapper.Rd
man/season_week_to_mmwr_year.Rd
man/season_week_to_year_week.Rd
man/simulate_trajectories_kcde.Rd
man/state_flu_data.Rd
man/to_standard_location_code.Rd
man/weighted_combine_predictions.Rd
man/year_week_to_season_week.Rd
prospective-predictions/region-kde/EW01-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW02-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW03-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW04-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW05-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW06-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW07-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW08-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW09-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW10-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW11-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW12-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW13-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW14-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW15-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW16-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW17-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW18-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW19-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW20-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW21-2020-ReichLab_kde.csv
prospective-predictions/region-kde/EW40-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW41-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW42-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW43-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW44-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW45-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW46-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW47-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW48-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW49-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW50-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW51-2019-ReichLab_kde.csv
prospective-predictions/region-kde/EW52-2019-ReichLab_kde.csv
prospective-predictions/state-kcde/EW42-2020-ReichLab_kcde.csv
prospective-predictions/state-kcde/EW43-2020-ReichLab_kcde.csv
prospective-predictions/state-kcde/EW44-2020-ReichLab_kcde.csv
prospective-predictions/state-kcde/EW45-2020-ReichLab_kcde.csv
prospective-predictions/state-kcde/EW46-2020-ReichLab_kcde.csv
prospective-predictions/state-kcde/EW47-2020-ReichLab_kcde.csv
prospective-predictions/state-kcde/EW48-2020-ReichLab_kcde.csv
prospective-predictions/state-sarimatd/EW42-2020-ReichLab_sarimatd.csv
prospective-predictions/state-sarimatd/EW43-2020-ReichLab_sarimatd.csv
prospective-predictions/state-sarimatd/EW44-2020-ReichLab_sarimatd.csv
prospective-predictions/state-sarimatd/EW45-2020-ReichLab_sarimatd.csv
prospective-predictions/state-sarimatd/EW46-2020-ReichLab_sarimatd.csv
prospective-predictions/state-sarimatd/EW47-2020-ReichLab_sarimatd.csv
prospective-predictions/state-sarimatd/EW48-2020-ReichLab_sarimatd.csv
src/Makevars
src/Makevars.win
src/utility.c
src/utility.h
submissions/region-GPthingy/csv/EW43-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW44-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW45-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW46-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW47-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW48-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW49-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW50-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW51-2019-KoT_GPthingy.csv
submissions/region-GPthingy/csv/EW52-2019-KoT_GPthingy.csv
submissions/region-GPthingy/predx/EW43-2019-KoT_GPthingy.rds
submissions/region-GPthingy/predx/EW44-2019-KoT_GPthingy.rds
submissions/region-KoT/csv/EW01-2020-ReichLab_KoT.csv
submissions/region-KoT/csv/EW42-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW43-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW44-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW45-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW46-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW47-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW48-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW49-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW50-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW51-2019-ReichLab_KoT.csv
submissions/region-KoT/csv/EW52-2019-ReichLab_KoT.csv
submissions/region-kcde_backfill_none/csv/EW01-2020-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW42-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW43-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW44-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW45-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW46-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW47-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW48-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW49-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW50-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW51-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/csv/EW52-2019-ReichLab_kcde_backfill_none.csv
submissions/region-kcde_backfill_none/predx/EW42-2019-ReichLab_kcde_backfill_none.rds
submissions/region-kcde_backfill_none/predx/EW43-2019-ReichLab_kcde_backfill_none.rds
submissions/region-kcde_backfill_none/predx/EW44-2019-ReichLab_kcde_backfill_none.rds
submissions/region-kcde_backfill_post_hoc/csv/EW01-2020-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW42-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW43-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW44-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW45-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW46-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW47-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW48-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW49-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW50-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW51-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/csv/EW52-2019-ReichLab_kcde_backfill_post_hoc.csv
submissions/region-kcde_backfill_post_hoc/predx/EW42-2019-ReichLab_kcde_backfill_post_hoc.rds
submissions/region-kcde_backfill_post_hoc/predx/EW43-2019-ReichLab_kcde_backfill_post_hoc.rds
submissions/region-kcde_backfill_post_hoc/predx/EW44-2019-ReichLab_kcde_backfill_post_hoc.rds
submissions/region-kde/csv/EW01-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW02-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW03-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW04-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW05-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW06-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW07-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW08-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW09-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW10-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW11-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW12-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW13-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW14-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW15-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW16-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW17-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW18-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW19-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW20-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW21-2020-ReichLab_kde.csv
submissions/region-kde/csv/EW40-2019-ReichLab_kde.csv
submissions/region-kde/csv/EW41-2019-ReichLab_kde.csv
submissions/region-kde/csv/EW42-2019-ReichLab_kde.csv
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submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW8-2017-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW8-2018-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW8-2019-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW9-2015-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW9-2016-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW9-2017-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW9-2018-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_finalized/csv/EW9-2019-predict-reg-sarimaTD.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW01-2020-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW42-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW43-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW44-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW45-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW46-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW47-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW48-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW49-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW50-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW51-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/csv/EW52-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/predx/EW42-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none-replicate_1.rds
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/predx/EW43-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none-replicate_1.rds
submissions/region-sarima_seasonal_difference_TRUE_backfill_none/predx/EW44-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_none-replicate_1.rds
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW01-2020-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW42-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW43-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW44-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW45-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW46-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW47-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW48-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW49-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW50-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW51-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/csv/EW52-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc.csv
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/predx/EW42-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc-replicate_1.rds
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/predx/EW43-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc-replicate_1.rds
submissions/region-sarima_seasonal_difference_TRUE_backfill_post_hoc/predx/EW44-2019-ReichLab_sarima_seasonal_difference_TRUE_backfill_post_hoc-replicate_1.rds
tests/testthat/run-tests.R
tests/testthat/test-datetime.R
tests/testthat/test-get_predx_forecasts_from_trajectory_samples.R
tests/testthat/test-scoring.R
vignettes/rRevisedILI.Rmd
