Files in reichlab/covidData
Versioned Data for COVID-19
.github/workflows/pr_unittests.yaml
.github/workflows/update_time_series_links.yaml
.github/workflows/update_time_series_links_csv.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/adjust_daily_incidence.R
R/calc_jhu_global_cum.R
R/covidData-package.R
R/data.R
R/fill_na.R
R/get_negative_cases.R
R/get_time_series_data_link.R
R/healthdata_data.R
R/healthdata_download.R
R/identify_outliers.R
R/impute_daily_incidence.R
R/jhu_data.R
R/load_covidcast_data.R
R/load_data.R
R/replace_negatives.R
README.md
code/data-processing/ar_bspline_forecast_daily.stan
code/data-processing/assemble-historical-jhu.R
code/data-processing/bspline_forecast_daily.stan
code/data-processing/get_imputed_data.R
code/data-processing/makefile
code/data-processing/save-fips.R
data-raw/healthdata/daily/2020-11-16_2020-11-15_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-18_2020-11-16_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-18_2020-11-17_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-19_2020-11-18_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-20_2020-11-19_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-23_2020-11-20_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-23_2020-11-21_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-23_2020-11-22_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-25_2020-11-23_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-25_2020-11-24_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-27_2020-11-25_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-27_2020-11-26_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-29_2020-11-27_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-29_2020-11-28_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-11-29_2020-11-29_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-01_2020-11-30_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-05_2020-12-01_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-05_2020-12-02_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-05_2020-12-03_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-05_2020-12-04_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-05_2020-12-05_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-06_2020-12-06_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-12_2020-12-07_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-12_2020-12-08_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-12_2020-12-09_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-12_2020-12-10_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-13_2020-12-11_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-13_2020-12-12_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-13_2020-12-13_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-18_2020-12-18_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-19_2020-12-19_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-20_2020-12-20_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-21_2020-12-21_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-22_2020-12-22_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-24_2020-12-24_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-25_2020-12-25_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-26_2020-12-26_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-27_2020-12-27_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-28_2020-12-28_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-29_2020-12-29_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-30_2020-12-30_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2020-12-31_2020-12-31_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-03_2021-01-03_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-06_2021-01-06_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-07_2021-01-07_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-09_2021-01-09_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-10_2021-01-10_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-12_2021-01-11_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-13_2021-01-12_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-14_2021-01-13_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-14_2021-01-14_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-18_2021-01-15_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-21_2021-01-16_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-21_2021-01-17_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-21_2021-01-18_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-21_2021-01-19_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-21_2021-01-20_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-23_2021-01-21_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-23_2021-01-22_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-24_2021-01-23_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-24_2021-01-24_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-28_2021-01-25_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-28_2021-01-26_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-28_2021-01-27_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-30_2021-01-28_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-31_2021-01-29_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-01-31_2021-01-30_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-01_2021-01-31_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-04_2021-02-01_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-05_2021-02-02_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-05_2021-02-03_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-05_2021-02-04_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-08_2021-02-05_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-08_2021-02-06_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-09_2021-02-08_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-10_2021-02-09_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-11_2021-02-10_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-12_2021-02-11_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-13_2021-02-12_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-14_2021-02-13_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-15_2021-02-14_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-16_2021-02-15_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-17_2021-02-16_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-18_2021-02-17_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-19_2021-02-18_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-20_2021-02-19_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-21_2021-02-20_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-22_2021-02-21_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-23_2021-02-22_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-24_2021-02-23_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-25_2021-02-24_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-26_2021-02-25_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-27_2021-02-26_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-02-28_2021-02-27_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-01_2021-02-28_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-02_2021-03-01_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-03_2021-03-02_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-04_2021-03-03_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-05_2021-03-04_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-06_2021-03-05_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-07_2021-03-06_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-08_2021-03-07_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-09_2021-03-08_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-10_2021-03-09_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-11_2021-03-10_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/daily/2021-03-12_2021-03-11_daily_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-11-16_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-11-18_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-11-22_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-11-29_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-12-06_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-12-13_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-12-18_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-12-21_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2020-12-28_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-01-03_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-01-10_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-01-18_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-01-24_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-02-01_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-02-08_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-02-13_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-02-14_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-02-20_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-02-27_time_series_covid19_hospitalizations_US.csv
data-raw/healthdata/timeseries/2021-03-06_time_series_covid19_hospitalizations_US.csv
data-raw/locations.csv
data/fips_codes.rdata
data/global_locations.rdata
data/healthdata_hosp_early_data.rdata
data/jhu_cases_imputed_data.rdata
data/jhu_deaths_imputed_data.rdata
data/jhu_global_cases_data.rdata
data/jhu_global_cases_data_links.csv
data/jhu_global_cases_data_links.rdata
data/jhu_global_deaths_data.rdata
data/jhu_global_deaths_data_links.csv
data/jhu_global_deaths_data_links.rdata
data/jhu_us_cases_data.rdata
data/jhu_us_cases_data_links.csv
data/jhu_us_cases_data_links.rdata
data/jhu_us_deaths_data.rdata
data/jhu_us_deaths_data_links.csv
data/jhu_us_deaths_data_links.rdata
man/adjust_daily_incidence.Rd
man/available_issue_dates.Rd
man/build_healthdata_data.Rd
man/calc_jhu_global_cum.Rd
man/covidData.Rd
man/download_healthdata_dailyrevision.Rd
man/download_healthdata_timeseries.Rd
man/fill_na.Rd
man/fips_codes.Rd
man/get_negative_cases.Rd
man/get_time_series_data_link.Rd
man/global_locations.Rd
man/healthdata_dailyrevision_history.Rd
man/healthdata_hosp_early_data.Rd
man/healthdata_timeseries_history.Rd
man/identify_outliers.Rd
man/impute_daily_incidence.Rd
man/jhu_cases_imputed_data.Rd
man/jhu_deaths_imputed_data.Rd
man/jhu_global_cases_data_links.Rd
man/jhu_global_deaths_data_links.Rd
man/jhu_us_cases_data_links.Rd
man/jhu_us_deaths_data_links.Rd
man/load_covidcast_data.Rd
man/load_data.Rd
man/load_healthdata_data.Rd
man/load_jhu_data.Rd
man/preprocess_healthdata_data.Rd
man/preprocess_jhu_data.Rd
man/replace_negatives.Rd
tests/testthat/run-tests.R
tests/testthat/test data/2020-07-16_time_series_covid19_confirmed_US.csv
tests/testthat/test data/2020-08-12_time_series_covid19_confirmed_US.csv
tests/testthat/test data/2021-01-11_time_series_covid19_confirmed_US.csv
tests/testthat/test data/2021-01-11_time_series_covid19_deaths_US.csv
tests/testthat/test data/2021-01-13_time_series_covid19_confirmed_US.csv
tests/testthat/test data/2021-01-13_time_series_covid19_deaths_US.csv
tests/testthat/test data/2021-05-25_time_series_covid19_confirmed_global.csv
tests/testthat/test data/2021-05-25_time_series_covid19_deaths_global.csv
tests/testthat/test data/test.csv
tests/testthat/test data/test_result.csv
tests/testthat/test-adjust-daily-incidence.R
tests/testthat/test-as_of.R
tests/testthat/test-calc_jhu_global_cum.R
tests/testthat/test-load_healthdata_data.R
tests/testthat/test-load_jhu_data-fill_na.R
tests/testthat/test-load_jhu_data-impute_and_redistribute.R
tests/testthat/test-load_jhu_data-reconstruct_time_series.R
tests/testthat/test-location_code.R
tests/testthat/test-preprocess_healthdata_data.R
tests/testthat/test-replace-negatives.R
vignettes/covidData.Rmd
vignettes/covidData.html
vignettes/outliers.R
