Files in reimandlab/ActiveDriverWGSR
A Driver Discovery Tool for Cancer Whole Genomes
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/ADWGS_test.R
R/ActiveDriverWGS.R
R/cancer_gene_sites-data.R
R/cancer_genes-data.R
R/cll-data.R
R/fix_all_results.R
R/format_muts.R
R/prepare_elements.R
README.md
data/cancer_gene_sites.RData
data/cancer_genes.RData
data/cll_mutations.RData
doc/ActiveDriverWGSR.R
doc/ActiveDriverWGSR.Rmd
doc/ActiveDriverWGSR.html
inst/extdata/cds_blockcount_error.bed
inst/extdata/cds_blocksize_error.bed
inst/extdata/cds_blockstart_error.bed
inst/extdata/cds_chrom_error.bed
inst/extdata/cds_column_error.bed
inst/extdata/cds_id_error.bed
inst/extdata/cds_str_coords_error.bed
inst/extdata/chr17.PTM_sites.bed
inst/extdata/chr17.coding_regions.bed
inst/extdata/mini.ptm.bed
inst/extdata/ptm_chrom_error.bed
inst/extdata/ptm_column_error.bed
inst/extdata/ptm_id_error.bed
inst/extdata/ptm_str_coords_error.bed
man/ADWGS_test.Rd
man/ActiveDriverWGS.Rd
man/cancer_gene_sites.Rd
man/cancer_genes.Rd
man/cll_mutations.Rd
man/dot-fix_all_results.Rd
man/dot-get_3n_context_of_mutations.Rd
man/dot-get_obs_exp.Rd
man/dot-get_signf_results.Rd
man/dot-make_mut_signatures.Rd
man/dot-split_coord_fragments_in_BED.Rd
man/format_muts.Rd
man/prepare_elements_from_BED12.Rd
man/prepare_elements_from_BED4.Rd
tests/testthat.R
tests/testthat/test_ADWGS_test.R
tests/testthat/test_ActiveDriverWGS.R
tests/testthat/test_format_muts.R
tests/testthat/test_input_format.R
tests/testthat/test_prepare_elements.R
vignettes/.DS_Store
vignettes/ADWGS_diagram.png
vignettes/ActiveDriverWGSR.Rmd
