API for revbayes/RevGadgets
Visualization and Post-Processing of 'RevBayes' Analyses
| Global functions | |
|---|---|
| .assign_state_labels | Source code |
| .buildTranslateDictionary | Source code |
| .build_state_probs | Source code |
| .collect_probable_states | Source code |
| .computeInterval | Source code |
| .convertAndRound | Source code |
| .findTreeLines | Source code |
| .getParent | Source code |
| .getRoot | Source code |
| .ggpie | Source code |
| .isColor | Source code |
| .isNexusFile | Source code |
| .isSingleNewick | Source code |
| .makeNodeNames | Source code |
| .makePlotData | Source code |
| .makeStates | Source code |
| .matchNodesTreeData | Source code |
| .nodepie | Source code |
| .pRightTailHorseshoeGrid | Source code |
| .parseTreeString | Source code |
| .readNexusTrees | Source code |
| .readOutputFile | Source code |
| .readTreeLogs | Source code |
| .removeNull | Source code |
| .setGMRFGlobalScaleExpectedNumberOfJumps | Source code |
| .setHSMRFGlobalScaleExpectedNumberOfJumps | Source code |
| .set_pp_factor_range | Source code |
| .simpleCap | Source code |
| .titleFormat | Source code |
| .titleFormatLabeller | Source code |
| GeomStepribbon | Man page |
| RevGadgets | Man page |
| add_tiplabels | Source code |
| calculateShiftBayesFactor | Man page Source code |
| colFun | Man page Source code |
| color_gradient | Source code |
| combineTraces | Man page Source code |
| densiTreeWithBranchData | Man page Source code |
| dropTip | Man page Source code |
| geom_stepribbon | Man page Source code |
| getMAP | Man page Source code |
| get_MRCA_heights | Source code |
| matchNodes | Man page Source code |
| plotAncStatesMAP | Man page Source code |
| plotAncStatesPie | Man page Source code |
| plotDivRates | Man page Source code |
| plotDiversityOBDP | Man page Source code |
| plotFBDTree | Man page Source code |
| plotHiSSE | Man page Source code |
| plotMassExtinctions | Man page Source code |
| plotMuSSE | Man page Source code |
| plotPopSizes | Man page Source code |
| plotPostPredStats | Man page Source code |
| plotTrace | Man page Source code |
| plotTree | Man page Source code |
| plotTreeFull | Man page Source code |
| posteriorSamplesToParametricPrior | Man page Source code |
| processAncStates | Man page Source code |
| processBranchData | Man page Source code |
| processDivRates | Man page Source code |
| processPopSizes | Man page Source code |
| processPostPredStats | Man page Source code |
| processSSE | Man page Source code |
| readOBDP | Man page Source code |
| readTrace | Man page Source code |
| readTrees | Man page Source code |
| removeBurnin | Man page Source code |
| reorder_treedata | Source code |
| rerootPhylo | Man page Source code |
| setMRFGlobalScaleHyperpriorNShifts | Man page Source code |
| simulateMRF | Man page Source code |
| sort_tips | Source code |
| sort_tips_phylo | Source code |
| summarizeTrace | Man page Source code |
