Files in rforge/intclust

Integrated Data Analysis via Clustering

R-Forge_Manual.pdf R/ADC.R R/ADEC.R R/ADECa.R R/ADECb.R R/ADECc.R R/BinFeaturesPlot.R R/BoxPlotDistance.R R/CEC.R R/CECa.R R/CECb.R R/CECc.R R/CharacteristicsFeatures.R R/ChooseCluster.R R/Cluster.R R/ClusterCols.R R/ClusterPlot.R R/ColorPalette.R R/ColorsNames.R R/CompareInteractive.R R/ComparePlot.R R/CompareSilCluster.R R/CompareSvsM.R R/ContFeaturesPlot.R R/DetermineWeight_SilClust.R R/DetermineWeight_SimClust.R R/DiffGenes.R R/DiffGenesSelection.R R/Distance.R R/FeatSelection.R R/FeaturesOfCluster.R R/FindCluster.R R/FindElement.R R/FindGenes.R R/Geneset.intersect.R R/Geneset.intersectSelection.R R/HeatmapPlot.R R/HeatmapSelection.R R/IntClust-internal.R R/LabelCols.R R/Labelplot.R R/Normalization.R R/PathwayAnalysis.R R/Pathways.R R/PathwaysIter.R R/PathwaysSelection.R R/PlotPathways.R R/PreparePathway.R R/ProfilePlot.R R/ReorderToReference.R R/SNF.R R/SNFa.R R/SNFb.R R/SNFc.R R/SelectnrClusters.R R/SharedComps.R R/SharedGenesPathsFeat.R R/SharedSelection.R R/SharedSelectionLimma.R R/SharedSelectionMLP.R R/SimilarityHeatmap.R R/SimilarityMeasure.R R/TrackCluster.R R/Ultimate.R R/WeightedClust.R R/WeightedSimClust.R R/WonM.R R/distanceheatmaps.R man/ADC.Rd man/ADEC.Rd man/ADECa.Rd man/ADECb.Rd man/ADECc.Rd man/BinFeaturesPlot.Rd man/BoxPlotDistance.Rd man/CEC.Rd man/CECa.Rd man/CECb.Rd man/CECc.Rd man/CharacteristicFeatures.Rd man/ChooseCluster.Rd man/Cluster.Rd man/ClusterPlot.Rd man/ColorPalette.Rd man/Colors1.Rd man/Colors2.Rd man/ColorsNames.Rd man/CompareInteractive.Rd man/ComparePlot.Rd man/CompareSilCluster.Rd man/CompareSvsM.Rd man/ContFeaturesPlot.Rd man/DetermineWeight._SimClust.Rd man/DetermineWeight_SilClust.Rd man/DiffGenes.Rd man/Distance.Rd man/FeaturesOfCluster.Rd man/FindCluster.Rd man/FindElement.Rd man/FindGenes.Rd man/GS.Rd man/GeneInfo.Rd man/Geneset.intersect.Rd man/HeatmapPlot.Rd man/HeatmapSelection.Rd man/IntClust-package.Rd man/LabelPlot.Rd man/Normalization.Rd man/PathwayAnalysis.Rd man/Pathways.Rd man/PathwaysIter.Rd man/PlotPathways.Rd man/PreparePathway.Rd man/ProfilePlot.Rd man/ReorderToReference.Rd man/SNF.Rd man/SNFa.Rd man/SNFb.Rd man/SNFc.Rd man/SelectnrClusters.Rd man/SharedComps.Rd man/SharedGenesPathsFeat.Rd man/SimilarityHeatmap.Rd man/SimilarityMeasure.Rd man/TrackCluster.Rd man/Ultimate.Rd man/WeightedClust.Rd man/WeightedSimClust.Rd man/WonM.Rd man/fingerprintMat.Rd man/geneMat.Rd man/targetMat.Rd pkg/R/ADC.R pkg/R/ADEC.R pkg/R/ADECa.R pkg/R/ADECb.R pkg/R/ADECc.R pkg/R/BinFeaturesPlot.R pkg/R/BoxPlotDistance.R pkg/R/CEC.R pkg/R/CECa.R pkg/R/CECb.R pkg/R/CECc.R pkg/R/CharacteristicsFeatures.R pkg/R/ChooseCluster.R pkg/R/Cluster.R pkg/R/ClusterCols.R pkg/R/Clusterplot.R pkg/R/Colorpalette.R pkg/R/ColorsNames.R pkg/R/CompareInteractive.R pkg/R/ComparePlot.R pkg/R/CompareSilCluster.R pkg/R/CompareSvsM.R pkg/R/ContFeaturesPlot.R pkg/R/DetermineWeight_SilClust.R pkg/R/DetermineWeight_SimClust.R pkg/R/DiffGenes.R pkg/R/DiffGenesSelection.R pkg/R/Distance.R pkg/R/FeatSelection.R pkg/R/FeaturesOfCluster.R pkg/R/FindCluster.R pkg/R/FindElement.R pkg/R/FindGenes.R pkg/R/Geneset.intersect.R pkg/R/Geneset.intersectSelection.R pkg/R/HeatmapPlot.R pkg/R/HeatmapSelection.R pkg/R/IntClust-internal.R pkg/R/LabelCols.R pkg/R/Labelplot.R pkg/R/Normalization.R pkg/R/PathwayAnalysis.R pkg/R/Pathways.R pkg/R/PathwaysIter.R pkg/R/PathwaysSelection.R pkg/R/PlotPathways.R pkg/R/PreparePathway.R pkg/R/ProfilePlot.R pkg/R/ReorderToReference.R pkg/R/SNF.R pkg/R/SNFa.R pkg/R/SNFb.R pkg/R/SNFc.R pkg/R/SelectnrClusters.R pkg/R/SharedComps.R pkg/R/SharedGenesPathsFeat.R pkg/R/SharedSelection.R pkg/R/SharedSelectionLimma.R pkg/R/SharedSelectionMLP.R pkg/R/SimilarityHeatmap.R pkg/R/SimilarityMeasure.R pkg/R/TrackCluster.R pkg/R/Ultimate.R pkg/R/WeightedClust.R pkg/R/WeightedSimClust.R pkg/R/WonM.R pkg/R/distanceheatmaps.R pkg/man/ADC.Rd pkg/man/ADEC.Rd pkg/man/ADECa.Rd pkg/man/ADECb.Rd pkg/man/ADECc.Rd pkg/man/BinFeaturesPlot.Rd pkg/man/BoxPlotDistance.Rd pkg/man/CEC.Rd pkg/man/CECa.Rd pkg/man/CECb.Rd pkg/man/CECc.Rd pkg/man/CharacteristicFeatures.Rd pkg/man/ChooseCluster.Rd pkg/man/Cluster.Rd pkg/man/ClusterPlot.Rd pkg/man/Colors1.Rd pkg/man/Colors2.Rd pkg/man/ColorsNames.Rd pkg/man/CompareInteractive.Rd pkg/man/ComparePlot.Rd pkg/man/CompareSilCluster.Rd pkg/man/CompareSvsM.Rd pkg/man/ContFeaturesPlot.Rd pkg/man/DetermineWeight._SimClust.Rd pkg/man/DetermineWeight_SilClust.Rd pkg/man/DiffGenes.Rd pkg/man/Distance.Rd pkg/man/FeaturesOfCluster.Rd pkg/man/FindCluster.Rd pkg/man/FindElement.Rd pkg/man/FindGenes.Rd pkg/man/GS.Rd pkg/man/GeneInfo.Rd pkg/man/Geneset.intersect.Rd pkg/man/HeatmapPlot.Rd pkg/man/HeatmapSelection.Rd pkg/man/IntClust-package.Rd pkg/man/LabelPlot.Rd pkg/man/Normalization.Rd pkg/man/PathwayAnalysis.Rd pkg/man/Pathways.Rd pkg/man/PathwaysIter.Rd pkg/man/PlotPathways.Rd pkg/man/PreparePathway.Rd pkg/man/ProfilePlot.Rd pkg/man/ReorderToReference.Rd pkg/man/SNF.Rd pkg/man/SNFa.Rd pkg/man/SNFb.Rd pkg/man/SNFc.Rd pkg/man/SelectnrClusters.Rd pkg/man/SharedComps.Rd pkg/man/SharedGenesPathsFeat.Rd pkg/man/SimilarityHeatmap.Rd pkg/man/SimilarityMeasure.Rd pkg/man/TrackCluster.Rd pkg/man/Ultimate.Rd pkg/man/WeightedClust.Rd pkg/man/WeightedSimClust.Rd pkg/man/WonM.Rd pkg/man/fingerprintMat.Rd pkg/man/geneMat.Rd pkg/man/targetMat.Rd pkg/vignettes/CompareSvsM.pdf pkg/vignettes/HeatmapSelection_MCF7W.pdf pkg/vignettes/IntClustVignette-ClusterPlotF.pdf pkg/vignettes/IntClustVignette-ClusterPlotT.pdf pkg/vignettes/IntClustVignette-ComparePlot.pdf pkg/vignettes/IntClustVignette-ComparePlot1.pdf pkg/vignettes/IntClustVignette-ComparePlot2.pdf pkg/vignettes/IntClustVignette-CompareSvsM.pdf pkg/vignettes/IntClustVignette-FeaturesPlotF.pdf pkg/vignettes/IntClustVignette-FeaturesPlotFP.pdf pkg/vignettes/IntClustVignette-FeaturesPlotT.pdf pkg/vignettes/IntClustVignette-ProfilePlot.pdf pkg/vignettes/IntClustVignette.pdf pkg/vignettes/Interactive1.pdf pkg/vignettes/InteractiveCluster.pdf pkg/vignettes/InteractiveMethod.pdf pkg/vignettes/SimilarityHeatmap_MCF7W.pdf pkg/vignettes/Tracking.pdf vignettes/CompareSvsM.pdf vignettes/HeatmapSelection_MCF7W.pdf vignettes/IntClustVignette-ClusterPlotF.pdf vignettes/IntClustVignette-ClusterPlotT.pdf vignettes/IntClustVignette-ComparePlot.pdf vignettes/IntClustVignette-ComparePlot1.pdf vignettes/IntClustVignette-ComparePlot2.pdf vignettes/IntClustVignette-CompareSvsM.pdf vignettes/IntClustVignette-FeaturesPlotF.pdf vignettes/IntClustVignette-FeaturesPlotFP.pdf vignettes/IntClustVignette-FeaturesPlotT.pdf vignettes/IntClustVignette-ProfilePlot.pdf vignettes/IntClustVignette.pdf vignettes/Interactive1.pdf vignettes/InteractiveCluster.pdf vignettes/InteractiveMethod.pdf vignettes/SimilarityHeatmap_MCF7W.pdf vignettes/Tracking.pdf