Global functions | |
---|---|
$<-,MsBackendCompDb-method | Man page |
.add_join_tables | Source code |
.add_mz_range_column | Source code |
.append_msms_spectra | Source code |
.available_peaks_variables | Source code |
.build_query_CompDb | Source code |
.check_parameter_file | Source code |
.collapse_spectrum_df | Source code |
.compound_id_from_mona_sdf | Source code |
.copy_compdb | Source code |
.create_ion_table | Source code |
.db_file_from_metadata | Source code |
.dbconn | Source code |
.dbflags | Source code |
.dbname | Source code |
.deserialize_mz_intensity | Source code |
.expand_spectrum_df | Source code |
.extract_field_from_string | Source code |
.extract_spectra_mona_sdf | Source code |
.fetch_data | Source code |
.fetch_peaks | Source code |
.field | Source code |
.filter_class | Source code |
.from | Source code |
.get_property | Source code |
.guess_sdf_source | Source code |
.has_msms_spectra | Source code |
.import_hmdb_ms_ms_spectrum | Source code |
.import_lipidblast | Source code |
.import_lipidblast_json_chunk | Source code |
.import_mona_sdf | Source code |
.initialize_compdb | Source code |
.insert_msms_spectra | Source code |
.is_sdf_filename | Source code |
.join_tables | Source code |
.map_spectraVariables_to_sql | Source code |
.map_sql_to_spectraVariables | Source code |
.metadata | Source code |
.metadata_value | Source code |
.msms_spectrum_add_missing_columns | Source code |
.order | Source code |
.parse_lipidblast_json_element | Source code |
.peaks_data | Source code |
.prefix_columns | Source code |
.prepare_msms_spectra_table | Source code |
.process_filter | Source code |
.reduce_tables | Source code |
.reduce_tables_start_from | Source code |
.select | Source code |
.simple_extract_compounds_sdf | Source code |
.spectra_data | Source code |
.sql_condition | Source code |
.sql_logicOp | Source code |
.sql_value | Source code |
.supported_filters | Source code |
.tables | Source code |
.throw_error | Source code |
.validCompDb | Source code |
.validIonDb | Source code |
.valid_compound | Source code |
.valid_data_frame_columns | Source code |
.valid_dbcon | Source code |
.valid_metadata | Source code |
.valid_msms_spectrum | Source code |
.where | Source code |
.where_filter | Source code |
CompDb | Man page Source code |
CompDb-class | Man page |
CompoundIdFilter | Man page Source code |
CompoundIdFilter-class | Man page |
ExactmassFilter | Man page Source code |
ExactmassFilter-class | Man page |
Filter-classes | Man page |
FormulaFilter | Man page Source code |
FormulaFilter-class | Man page |
InchiFilter | Man page Source code |
InchiFilter-class | Man page |
InchikeyFilter | Man page Source code |
InchikeyFilter-class | Man page |
IonAdductFilter | Man page Source code |
IonAdductFilter-class | Man page |
IonDb | Man page |
IonDb,CompDb,missing-method | Man page |
IonDb,DBIConnection,CompDb-method | Man page |
IonDb,DBIConnection,missing-method | Man page |
IonDb,character,CompDb-method | Man page |
IonDb,character,missing-method | Man page |
IonDb,missing,missing-method | Man page |
IonDb-class | Man page |
IonIdFilter | Man page Source code |
IonIdFilter-class | Man page |
IonMzFilter | Man page Source code |
IonMzFilter-class | Man page |
IonRtFilter | Man page Source code |
IonRtFilter-class | Man page |
MsBackendCompDb | Man page Source code |
MsBackendCompDb-class | Man page |
MsmsMzRangeMaxFilter | Man page Source code |
MsmsMzRangeMaxFilter-class | Man page |
MsmsMzRangeMinFilter | Man page Source code |
MsmsMzRangeMinFilter-class | Man page |
NameFilter | Man page Source code |
NameFilter-class | Man page |
Spectra,CompDb-method | Man page |
SpectrumIdFilter | Man page Source code |
SpectrumIdFilter-class | Man page |
[,MsBackendCompDb,ANY-method | Man page |
backendBpparam,MsBackendCompDb-method | Man page |
backendInitialize,MsBackendCompDb-method | Man page |
compoundVariables | Man page |
compoundVariables,CompDb-method | Man page |
compound_tbl_lipidblast | Man page Source code |
compound_tbl_sdf | Man page Source code |
compounds,CompDb-method | Man page |
copyCompDb | Man page Source code |
createCompDb | Man page Source code |
createCompDbPackage | Man page Source code |
dataStorage,MsBackendCompDb-method | Man page |
dbconn,CompDb-method | Man page |
deleteCompound | Man page |
deleteCompound,CompDb-method | Man page |
deleteCompound,IonDb-method | Man page |
deleteIon | Man page |
deleteIon,IonDb-method | Man page |
deleteSpectra | Man page |
deleteSpectra,CompDb-method | Man page |
emptyCompDb | Man page Source code |
expandMzIntensity | Man page Source code |
extractByIndex,MsBackendCompDb,ANY-method | Man page |
hasMsMsSpectra | Man page Source code |
import_mona_sdf | Man page Source code |
insertCompound | Man page |
insertCompound,CompDb-method | Man page |
insertIon | Man page |
insertIon,IonDb-method | Man page |
insertSpectra | Man page |
insertSpectra,CompDb,Spectra-method | Man page |
intensity<-,MsBackendCompDb-method | Man page |
ionVariables | Man page |
ionVariables,IonDb-method | Man page |
ions | Man page |
ions,IonDb-method | Man page |
make_metadata | Man page Source code |
mass2mz | Man page |
mass2mz,ANY-method | Man page |
mass2mz,CompDb-method | Man page |
metadata,CompDb-method | Man page |
msms_spectra_hmdb | Man page Source code |
msms_spectra_mona | Man page Source code |
mz<-,MsBackendCompDb-method | Man page |
peaksData,MsBackendCompDb-method | Man page |
peaksVariables,MsBackendCompDb-method | Man page |
precScanNum,MsBackendCompDb-method | Man page |
show | Man page |
show,CompDb-method | Man page |
show,IonDb-method | Man page |
show,MsBackendCompDb-method | Man page |
spectraData,MsBackendCompDb-method | Man page |
spectraNames,MsBackendCompDb-method | Man page |
spectraNames<-,MsBackendCompDb-method | Man page |
spectraVariables,CompDb-method | Man page |
src_compdb | Man page Source code |
supportedFilters,CompDb-method | Man page |
tables | Man page Source code |
tic,MsBackendCompDb-method | Man page |
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