Files in rformassspectrometry/PSM
Handling and Managing Peptide Spectrum Matches
.Rbuildignore
.editorconfig
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/ConnectedComponent-class.R
R/PSM-class.R
R/PSM-filter.R
R/PSM-read.R
R/PSM-reduce.R
R/PSMatch-package.R
R/adjacencyMatrix-accessors.R
R/adjacencyMatrix-create.R
R/adjacencyMatrix-plot.R
R/describe.R
R/fragments-calculate.R
R/fragments-label.R
R/fragments-utils.R
R/functions-mzR.R
R/plotSpectra-PTM.R
README.md
man/ConnectedComponents.Rd
man/PSM.Rd
man/PSMatch.Rd
man/adjacencyMatrix.Rd
man/calculateFragments.Rd
man/describeProteins.Rd
man/filterPSMs.Rd
man/getAminoAcids.Rd
man/getAtomicMass.Rd
man/labelFragments.Rd
man/plotSpectraPTM.Rd
tests/testthat.R
tests/testthat/_snaps/plotSpectraPTM/deltamz-false.svg
tests/testthat/_snaps/plotSpectraPTM/deltamz-true.svg
tests/testthat/_snaps/plotSpectraPTM/diff-col.svg
tests/testthat/_snaps/plotSpectraPTM/usi-true.svg
tests/testthat/test_ConnectedComponents.R
tests/testthat/test_PSM.R
tests/testthat/test_adjacencyMatrix.R
tests/testthat/test_describe.R
tests/testthat/test_fragments.R
tests/testthat/test_labelFragments.R
tests/testthat/test_plotSpectraPTM.R
vignettes/AdjacencyMatrix.Rmd
vignettes/Fragments.Rmd
vignettes/PSM.Rmd
