Man pages for rformassspectrometry/PSM
Handling and Managing Peptide Spectrum Matches
| adjacencyMatrix | Convert to/from an adjacency matrix. |
| calculateFragments | Calculate ions produced by fragmentation with variable... |
| ConnectedComponents | Connected components |
| describeProteins | Describe protein and peptide compositions |
| filterPSMs | Filter out unreliable PSMs. |
| getAminoAcids | Amino acids |
| getAtomicMass | Atomic mass. |
| labelFragments | labels MS2 Fragments |
| plotSpectraPTM | Function to plot MS/MS spectra with PTMs |
| PSM | A class for peptide-spectrum matches |
| PSMatch | PSMatch: Handling and Managing Peptide Spectrum Matches |
