addFragments | Adds MS2 Fragments |
adjacencyMatrix | Convert to/from an adjacency matrix. |
calculateFragments | Calculate ions produced by fragmentation |
ConnectedComponents | Connected components |
describeProteins | Describe protein and peptide compositions |
filterPSMs | Filter out unreliable PSMs. |
getAminoAcids | Amino acids |
getAtomicMass | Atomic mass. |
PSM | A class for peptide-spectrum matches |
PSMatch | PSMatch: Handling and Managing Peptide Spectrum Matches |
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