chunkapply | Apply a function stepwise to chunks of data |
combinePeaksData | Combine peaks with similar m/z across spectra |
countIdentifications | Count the number of identifications per scan |
estimatePrecursorIntensity | Estimate Precursor Intensities |
estimatePrecursorMz | Estimating precursor m/z valus for DDA data |
filterFourierTransformArtefacts | Fast fourier transform artefact filter |
filterPeaksRanges | Filter peaks based on spectra and peaks variable ranges |
hidden_aliases | Internal page for hidden aliases |
joinPeaks | Join (map) peaks of two spectra |
MsBackend | Mass spectrometry data backends |
MsBackendCached | Base MsBackend class providing data caching mechanism |
neutralLoss | Calculate Neutral Loss Spectra |
plotMzDelta | MZ delta Quality Control |
processingChunkSize | Parallel and chunk-wise processing of 'Spectra' |
Spectra | The Spectra class to manage and access MS data |
spectra-plotting | Plotting Spectra |
spectraVariableMapping | Mapping between spectra variables and data file fields |
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