Man pages for rformassspectrometry/Spectra
Spectra Infrastructure for Mass Spectrometry Data
| addProcessing | Data manipulation and analysis methods |
| chunkapply | Apply a function stepwise to chunks of data |
| combinePeaks | Aggregating and combining mass peaks data |
| combinePeaksData | Combine peaks with similar m/z across spectra |
| combineSpectra | Merging, aggregating and splitting Spectra |
| compareSpectra | Spectra similarity calculations |
| countIdentifications | Count the number of identifications per scan |
| estimatePrecursorIntensity | Estimate Precursor Intensities |
| estimatePrecursorMz | Estimating precursor m/z valus for DDA data |
| filterFourierTransformArtefacts | Fast fourier transform artefact filter |
| filterMsLevel | Filter and subset Spectra objects |
| filterPeaksRanges | Filter peaks based on spectra and peaks variable ranges |
| hidden_aliases | Internal page for hidden aliases |
| joinPeaks | Join (map) peaks of two spectra |
| MsBackend | Mass spectrometry data backends |
| MsBackendCached | Base MsBackend class providing data caching mechanism |
| neutralLoss | Calculate Neutral Loss Spectra |
| plotMzDelta | MZ delta Quality Control |
| processingChunkSize | Parallel and chunk-wise processing of 'Spectra' |
| Spectra | The Spectra class to manage and access MS data |
| spectraData | Accessing mass spectrometry data |
| spectra-plotting | Plotting Spectra |
| spectraVariableMapping | Mapping between spectra variables and data file fields |
