.DS_Store
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/workflows/check-standard.yaml
.github/workflows/draft-pdf.yml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
PhaseTypeR.Rproj
R/.DS_Store
R/._.DS_Store
R/DPH.R
R/DPH_functions.R
R/MDPH.R
R/MDPH_functions.R
R/MPH.R
R/MPH_functions.R
R/PH.R
R/PH_functions.R
R/check_phase_type.R
R/generator_functions.R
R/mean.R
R/moments.R
R/phase_type_to_network.R
R/print.R
R/reward_phase_type.R
R/summary.R
R/var.R
README.Rmd
README.md
_pkgdown.yml
cran-comments.md
docs/._index.html
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/articles/PhaseTypeR.html
docs/articles/PhaseTypeR_files/anchor-sections-1.0/anchor-sections.css
docs/articles/PhaseTypeR_files/anchor-sections-1.0/anchor-sections.js
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docs/articles/phasty_SFS_files/header-attrs-2.5/header-attrs.js
docs/articles/phasty_SFS_files/header-attrs-2.9.4/header-attrs.js
docs/articles/pop_gen_iker.html
docs/articles/pop_gen_iker_files/anchor-sections-1.0/anchor-sections.css
docs/articles/pop_gen_iker_files/anchor-sections-1.0/anchor-sections.js
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docs/reference/DPHrep.html
docs/reference/MDPH_functions.html
docs/reference/MPH_functions.html
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docs/sitemap.xml
inst/CITATION
man/DPH_functions.Rd
man/MDPH_functions.Rd
man/MPH_functions.Rd
man/PH_functions.Rd
man/check_phase_type.Rd
man/check_reward.Rd
man/generator_functions.Rd
man/mean.Rd
man/moment_mph.Rd
man/moment_ph.Rd
man/perm.Rd
man/phase_type_to_network.Rd
man/print.cont_phase_type.Rd
man/reward_phase_type.Rd
man/summary.cont_phase_type.Rd
man/summary.disc_phase_type.Rd
man/summary.mult_cont_phase_type.Rd
man/summary.mult_disc_phase_type.Rd
man/var.Rd
paper/fig_simonsen_cor.pdf
paper/paper.bib
paper/paper.md
paper/paper.pdf
paper/recomb_graph.pdf
tests/testthat.R
tests/testthat/_snaps/DPH_functions.md
tests/testthat/_snaps/MDPH_functions.md
tests/testthat/_snaps/MPH_functions.md
tests/testthat/_snaps/PH_functions.md
tests/testthat/_snaps/cont_reward.md
tests/testthat/_snaps/disc_reward.md
tests/testthat/_snaps/mean_var.md
tests/testthat/_snaps/phase_type_to_network.md
tests/testthat/_snaps/summary.md
tests/testthat/test-DPH.R
tests/testthat/test-DPH_functions.R
tests/testthat/test-MDPH.R
tests/testthat/test-MDPH_functions.R
tests/testthat/test-MPH.R
tests/testthat/test-MPH_functions.R
tests/testthat/test-PH.R
tests/testthat/test-PH_functions.R
tests/testthat/test-cont_reward.R
tests/testthat/test-disc_reward.R
tests/testthat/test-mean_var.R
tests/testthat/test-phase_type_to_network.R
tests/testthat/test-summary.R
vignettes/.DS_Store
vignettes/.build.timestamp
vignettes/.gitignore
vignettes/PhaseTypeR.Rmd
vignettes/a2_pop_gen_iker.Rmd
vignettes/a3_phasetypeR_SFS.Rmd
vignettes/for_vignette.bib
vignettes/preamble-mathjax.tex