Files in robertamezquita/marge
API for HOMER in R for Genomic Analysis using Tidy Conventions
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/check_homer.R
R/data.R
R/find_motifs_genome.R
R/find_motifs_instances.R
R/onAttach.R
R/read_denovo_html_results.R
R/read_denovo_results.R
R/read_motifs_instances.R
R/read_results.R
R/utils.R
R/write_pwm.R
README.Rmd
README.html
README.md
data-raw/generate_motif_db.R
data/HOMER_motifs.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/marge-workflow.html
docs/articles/marge-workflow_files/figure-html/unnamed-chunk-24-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/HOMER_motifs.html
docs/reference/check_homer.html
docs/reference/dot-parse_homer_subfields.html
docs/reference/figures/Marge_Simpson.png
docs/reference/find_motifs_genome.html
docs/reference/find_motifs_instances.html
docs/reference/get_homer_bin.html
docs/reference/index.html
docs/reference/list_homer_packages.html
docs/reference/pipe.html
docs/reference/read_denovo_html_results.html
docs/reference/read_denovo_results.html
docs/reference/read_known_results.html
docs/reference/read_motif.html
docs/reference/read_motifs_instances.html
docs/reference/write_homer_motif.html
inst/exec/build_site.R
inst/exec/devtools_check.R
inst/extdata/1-CACATCCT.motif
inst/extdata/ap1.motif
inst/extdata/homerMotifs.all.motifs
inst/extdata/knownResults.txt
inst/extdata/motif-instances.txt
inst/extdata/my-motifs.motif
inst/extdata/tbl_results.rda
inst/extdata/tbl_results.tsv
inst/extdata/test.motif
inst/extdata/test_inst.txt
inst/extdata/test_regions.bed
inst/extdata/znf7.motif
man/HOMER_motifs.Rd
man/check_homer.Rd
man/dot-parse_homer_subfields.Rd
man/figures/Marge_Simpson.png
man/find_motifs_genome.Rd
man/find_motifs_instances.Rd
man/get_homer_bin.Rd
man/list_homer_packages.Rd
man/pipe.Rd
man/read_denovo_html_results.Rd
man/read_denovo_results.Rd
man/read_known_results.Rd
man/read_motif.Rd
man/read_motifs_instances.Rd
man/write_homer_motif.Rd
tests/testthat.R
tests/testthat/helper_data.R
tests/testthat/test-homer-install.R
tests/testthat/test-homer.R
tests/testthat/test-read.R
vignettes/marge-workflow.Rmd
