| Aijfcn | A function to calculate the nitrogen surplus or deficit each... |
| Andres2016 | The soil food webs published for grazed and ungrazed plots in... |
| build_foodweb | A function to compile the food web from simple data inputs |
| calc_smin | Calculate the strength of stability as smin. |
| calculate_inputs | A function to calculate the inputs and outputs at equilibrium... |
| calculate_smin | Function used inside the calc_smin function |
| can_mutfeed | A function that identifies cannibalism and mutual feeding |
| checkcomm | A function check the community for errors before it is used... |
| checkeqm | Check the carbon flux equilibrium output by comana. |
| Cijfcn | A utility function to calculate the consumption rate of each... |
| CNsim | A function to simulate the dynamics over time wrapping... |
| comana | A function to calculate carbon and nitrogen fluxes in the... |
| comtrosp | A function to combine trophic species. |
| correct_diet | A function to correct the diet of trophic species. |
| correction_function | A function to correct stoichiometry dynamically |
| corrstoich | Correct stoichiometry |
| decompexpt | Decomposition rates and effect of individual organisms |
| deRuiter1994 | The soil food webs published for conventional (CON) and... |
| foodwebode | A function to simulation the food webs away from equilibrium. |
| getPARAMS | A function to get the parameters for a food web model. |
| Holtkamp2011 | The soil food webs published along a chronosequence in the... |
| Hunt1987 | The soil food web published for CPER |
| intro_comm | A baseline community for examples |
| Jacobsindex | Calculate Jacob's index. |
| Koltz2018 | The soil food web published for an Arctic Tundra site |
| newnode | Add node to the community |
| parameter_uncertainty | Parameter uncertainty returns community with new parameters... |
| productionadj | A function to fix production efficiency. |
| removenodes | Remove nodes from community. |
| renamenode | Rename a node in a community. |
| RESCALE | A function to rescale a vector. |
| stability | Calculates the stability of the food web |
| stability2 | A function to run the stability analysis using the numerical... |
| TLcheddar | Calculates the trophic level for each tropospecies |
| TLsort | Sorts the trophic levels from lowest to highest |
| whomineralizes | Direct and indirect contributions to mineralizations |
