Man pages for roderickslieker/CONQUER
CONQUER
| agnesPearson | agnesPearson |
| AnalyseSNPs | AnalyseSNPs |
| calculateOdds | calculateOdds |
| chromInteractionsToBED | chromInteractionsToBED |
| ClusterAgnesSpearman | Cluster Agnes /Spearman |
| ClusterPam | ClusterPam |
| extract.eQTLs | Extract eQTLs |
| extract.LD | Extract LD |
| extract.pathways | Extract enriched pathways |
| GeneNameToVersionedID | GeneNameToVersionedID |
| getAllSNPLD | LDsnps |
| getChromatinData | getChromatinData |
| getChromatinInteractionData | getChromatinInteractionData |
| getCoexpression | getCoexpression |
| getEnrichREnrichment | importFrom httr POST import enrichR import ggplot2 |
| get_eQTL_bulk | get_eQTL_bulk |
| get_eQTL_precalculated | get_eQTL_bulk |
| getExons | getExons |
| getGeneExpressionLevels | geteQTLdata |
| getLDLink | getLDLink |
| getRegion | getRegion |
| getVariantInfoEnsembl | getVariantInfoEnsembl |
| KEGG_DATA | KEGG_DATA |
| PrepareChromatinStates | PrepareChromatinStates |
| resources | Dataframe of the data used in CONQUER GTEx Analysis V8 (dbGaP... |
| summarize | Collect data for one or more SNPs and perform an optional... |
| updateallOR | Add eQTLs to allOR |
| visualize | Main function to visualize the investigated SNPs |
| visualizeDashboard | visualizeDashboard |
