Man pages for rogerswt/wadeTools
Wade's Hodgepodge of Flow Cytometry Functions
| asinhTransform | Create a FlowCore Compatible Transform Object |
| asx | Shorthand Function for Arcsinh Transformation |
| autocomp | Apply a Compensation Matrix |
| ax | Draw Pretty Axes (legacy base graphics) |
| biexp | Calculate a Biexponential Transformation |
| biexpTransform | Create a FlowCore Compatible Transform Object |
| blob.boundary | Find Blobs in 2 Dimensions |
| boxcoxTransform | Create a FlowCore Compatible Transform Object |
| bx | Shorthand Function for Biexponential Transformation |
| centroid | Centroid of a Blob Contour |
| clean.fp | Remove Non-stationary Events |
| compute_spill | Calculate a Spillover Matrix from Diva Controls |
| cumm.kde | Calculate the Cummulative Probability Distribution of a KDE |
| deGate | A Fancy 1D Threshold Calculator |
| deneg | Get Rid of Events Whose Parameter Value is Below Zero |
| derail | Get Rid of Events on the Rail |
| deriv1.kde | Estimate the First Derivative of a KDE |
| detect_fl_parameters | Detect Fluorescence Parameters in a flowFrame |
| detect_scatter_parameters | Detect Scattering Parameters in a flowFrame |
| doTransform | A Convenience Wrapper for Transformation |
| find.local.maxima | Find Local Maxima in a KDE |
| find.local.minima | Find Local Minima in a KDE |
| find.width | Calculate the Width of a KDE |
| fit_gaussian_base | Generate a Gaussian From a KDE |
| gaussian_crossover | Find the Crossover Point of Two Gaussians |
| gaussian_dist | Generate a Gaussian GDE Distribution |
| get.hull | Get the Convex Hull of a Blob |
| get_sample | Read an FCS File and Do Some Processing |
| ggflow | Draw a FlowJo-style (sort of) Plot Using ggplot Semantics |
| iasx | Shorthand Function for Inverse Arcsinh Transformation |
| ibx | Shorthand Function for Inverse Biexponential Transformation |
| inflate.contour | Inflate a Blob Contour |
| inv.biexp | Calculate an Inverse Biexponential Transformation |
| normalize.kde | Normalize a KDE |
| polygon.area | Calculate a Blob's Area |
| polygon.convexity | Calculate a Blob's Convexity |
| pplot | Draw a FlowJo-style (sort of) Plot |
| replace_phedata_ranges | Replace range data in the pData(parameters(ff)) slot |
| retrieve_sigma_mu | Get the Gaussian Parameters of a GDE |
| smooth.contour | Smooth a Blob Contour |
| swap.names | Re-arrange Parameter Labeling in a flowFrame |
| text_to_path | Make a Properly Formatted File Path |
| tick.labels | Label (Quasi-)Logarithmic Tickmarks |
| ticks_breaks_labels | Support for ggplot-style axis labeling |
| tight | Paste Tightly |
| wadeTools | wadeTools package of moderately useful flow cytometry... |
| w.arcsinh | Calculate a Arcsinh Transformation |
| w.inv.arcsinh | Calculate an Inverse Arcsinh Transformation |
