| combine_datasets | Combine extracted simulation datasets |
| extract_from_simulations | Extract data from simulations |
| find_completed | Find completed events |
| find_simulations | Find simulations |
| is_isolated | Find simulations that have reached a threshold along one... |
| plot_fst_map | Fst scan through time |
| plot_fst_scan | Full genome Fst scan |
| plot_genome_circle | Plot circular genome scan |
| plot_genome_scan | Plot genome scan |
| plot_genome_scan_through_time | Plot genome scan through time |
| plot_likelihood_scape | Speciation scape |
| plot_multiple_likelihood_scapes | Multiple speciation scapes |
| plot_projected_trajectories | Plot simulations |
| plot_speciation_cube | Speciation cube |
| plot_through_time | Plot simulation metric through time |
| smoothen_bins | Smoothen a trajectory |
| subset_completed | Subset completed events |
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