Man pages for ryananeff/superNOVA
Differential coexpression within multiple subgroups of data
| analyse_sim_results | Analyse superNOVA simulated data results for two group and... |
| chowCor | Runs the superNOVA pipeline directly on one or two feature... |
| chowParallel | Calls the superNOVA pipeline, splitting input matrix into... |
| chowParallelWorker | Worker thread for chowParallel (internal function). |
| extractModuleGO | Extract results from the module GO analysis |
| filterGenes | Filter rows out of a matrix. |
| flattenChow | Convert the output from superNOVA chowCor to an annotated... |
| getGroupsFromDesign | Split input matrix(es) based on the design matrix. |
| getQValue | Calculates qvalues for any kind of data, failing gracefully.... |
| hybridCorMat | Create a hybrid correlation matrix for each subgroup |
| moduleDC | Calculate modular differential connectivity (MDC) |
| moduleGO | Perform module GO-trait correlation |
| plotGOOneGroup | Plot results from a hypergeometric enrichment test for one... |
| plotGOTwoGroups | Plot results from a hypergeometric enrichment test to compare... |
| plotModuleGO | Plot extracted results from module-based GO enrichment... |
| plotPairwiseReg | Plot multiple linear regressions for each subgroup for a pair... |
| plot_results_3gr | Plot ROC curves for superNOVA simulated data observed and... |
| plot_sim_results | Plot ROC curves for superNOVA simulated data observed and... |
| plotVals | Creates a dotplot of the overall values for an individual... |
| simulate_data | Simulate differentially linearly coexpressed genes between... |
| simulate_data_3gr | Simulate differentially linearly coexpressed genes between... |
| snMEGENA | SuperNOVA subgroup-specific hybrid MEGENA networks |
| superNOVAFindSignificant | Find groups of differentially coexpressed gene symbols. |
