API for saeyslab/muscatWrapper
Wrapper functions around muscat for differential expression analysis of multi-sample multi-condition scRNAseq datasets
| Global functions | |
|---|---|
| add_empirical_pval_fdr | Man page Source code |
| fix_frq_df | Man page Source code |
| get_DE_info | Man page Source code |
| get_FDR_empirical | Man page Source code |
| get_FDR_empirical_plots | Man page Source code |
| get_FDR_empirical_plots_all | Man page Source code |
| get_abundance_info | Man page Source code |
| get_avg_frac_exprs_abund | Man page Source code |
| get_empirical_pvals | Man page Source code |
| get_expression_info | Man page Source code |
| get_muscat_exprs_avg | Man page Source code |
| get_muscat_exprs_frac | Man page Source code |
| get_pseudobulk_logCPM_exprs | Man page Source code |
| make_DEgene_dotplot_pseudobulk | Man page Source code |
| make_DEgene_dotplot_pseudobulk_covariate | Man page Source code |
| make_DEgene_dotplot_pseudobulk_reversed | Man page Source code |
| make_DEgene_violin_plot | Man page Source code |
| muscat_analysis | Man page Source code |
| p.adjust_empirical | Man page |
| perform_muscat_de_analysis | Man page Source code |
| sce | Man page |
