saezlab/CARNIVAL-Bioconductor-Dev: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Enio Gjerga, Panuwat Trairatphisan, Anika Liu, Alberto Valdeolivas, Nikolas Peschke |
| Bioconductor views | GeneExpression Network Transcriptomics |
| Maintainer | Enio Gjerga <enio.gjerga@gmail.com> |
| License | GPL-3 |
| Version | 1.0.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
