API for saezlab/CARNIVAL-Bioconductor-Dev
A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
| Global functions | |
|---|---|
| AddPerturbationNode | Source code |
| GeneSymbol2Uniprot | Source code |
| Uniprot2GeneSymbol | Source code |
| WriteDOTfig | Source code |
| all_constraints_wLoop | Source code |
| append_binaries | Source code |
| append_bounds | Source code |
| append_general_variables | Source code |
| append_objective_function | Source code |
| assignPROGENyScores | Man page Source code |
| buildDataMatrix | Source code |
| checkInputObj | Source code |
| checkInputs | Source code |
| checkMeasObj | Source code |
| checkNetwork | Source code |
| checkSolver | Source code |
| checkSolverParam | Source code |
| checkWeightObj | Source code |
| cleanupCARNIVAL | Source code |
| controlNodeIdentifiers | Source code |
| createRegulonList | Man page Source code |
| create_variables_all | Source code |
| exportResult | Source code |
| exportResultAllConditions | Source code |
| exportResultCBC | Source code |
| exportResultCPLEX | Source code |
| exportResultLPSolve | Source code |
| generateTFList | Man page Source code |
| generate_measfile | Source code |
| prepareLPMatrixSingle | Source code |
| runCARNIVAL | Man page Source code |
| solveCARNIVAL | Source code |
| solveCARNIVALSingle | Source code |
| transformBinaries | Source code |
| transformBounds | Source code |
| transformConstraints | Source code |
| transformLPFile | Source code |
| transformObjectiveFunction | Source code |
| transformVariables | Source code |
| writeLPFile | Source code |
| writeSolverFiles | Source code |
| write_binaries | Source code |
| write_binaries_all_conditions | Source code |
| write_boundaries | Source code |
| write_boundaries_all_conditions | Source code |
| write_constraints_1 | Source code |
| write_constraints_1_all | Source code |
| write_constraints_2 | Source code |
| write_constraints_2_all | Source code |
| write_constraints_3 | Source code |
| write_constraints_3_all | Source code |
| write_constraints_4 | Source code |
| write_constraints_4_all | Source code |
| write_constraints_5 | Source code |
| write_constraints_5_all | Source code |
| write_constraints_6 | Source code |
| write_constraints_7 | Source code |
| write_constraints_8 | Source code |
| write_constraints_objFunction_all | Source code |
| write_experimental_conditions_constraints | Source code |
| write_generals | Source code |
| write_generals_all_conditions | Source code |
| write_loop_constraints | Source code |
| write_objective_function | Source code |
| write_objective_function_all | Source code |
