Files in saezlab/CARNIVAL-Bioconductor-Dev

A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

R/AddPerturbationNode.R R/Uniprot2GeneSymbol.R R/WriteDOTfig.R R/all_constraints_wLoop.R R/append_binaries.R R/append_bounds.R R/append_general_variables.R R/append_objective_function.R R/assignPROGENyScores.R R/buildDataMatrix.R R/checkInputObj.R R/checkInputs.R R/checkMeasObj.R R/checkNetwork.R R/checkSolver.R R/checkSolverParam.R R/checkWeightObj.R R/cleanupCARNIVAL.R R/controlNodeIdentifiers.R R/createRegulonList.R R/create_variables_all.R R/exportResult.R R/exportResultAllConditions.R R/exportResultCBC.R R/exportResultCPLEX.R R/exportResultLPSolve.R R/generateTFList.R R/generate_measfile.R R/genesymbol2uniprot.R R/prepareLPMatrixSingle.R R/runCARNIVAL.R R/solveCARNIVAL.R R/solveCARNIVALSingle.R R/transformBinaries.R R/transformBounds.R R/transformConstraints.R R/transformLPFile.R R/transformObjectiveFunction.R R/transformVariables.R R/writeLPFile.R R/writeSolverFiles.R R/write_binaries.R R/write_binaries_all_conditions.R R/write_boundaries.R R/write_boundaries_all_conditions.R R/write_constraints_1.R R/write_constraints_1_all.R R/write_constraints_2.R R/write_constraints_2_all.R R/write_constraints_3.R R/write_constraints_3_all.R R/write_constraints_4.R R/write_constraints_4_all.R R/write_constraints_5.R R/write_constraints_5_all.R R/write_constraints_6.R R/write_constraints_7.R R/write_constraints_8.R R/write_constraints_objFunction_all.R R/write_experimental_conditions_constraints.R R/write_generals.R R/write_generals_all_conditions.R R/write_loop_constraints.R R/write_objective_function.R R/write_objective_function_all.R README.md man/assignPROGENyScores.Rd man/createRegulonList.Rd man/generateTFList.Rd man/runCARNIVAL.Rd