Files in saezlab/dorothea_R
Collection Of Human And Mouse TF Regulons
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/data.R
R/helpers.R
R/utils-pipe.R
R/viper_wrapper.R
README.md
data/dorothea_hs.rda
data/dorothea_mm.rda
data/entire_database.rda
dorothea.Rproj
inst/extdata/README.md
inst/extdata/annotations/gene_annotation.rds
inst/extdata/annotations/hgnc_mgi_annotation.rds
inst/extdata/annotations/hsa_uniprot_20180314.txt
inst/extdata/annotations/human_tf_census.txt
inst/extdata/annotations/tf_annotation.rds
inst/extdata/annotations/uniprot_annotation.rds
inst/extdata/for_vignette/seurat_object.RData
inst/extdata/networks/chip_seq/remap/network.rds
inst/extdata/networks/curated/fantom_4/network_with_pubmed.rds
inst/extdata/networks/curated/htri_db/network_with_pubmed.rds
inst/extdata/networks/curated/int_act/network_with_pubmed.rds
inst/extdata/networks/curated/kegg/network.rds
inst/extdata/networks/curated/nfi_regulome_db/network.rds
inst/extdata/networks/curated/oreganno/network_with_pubmed.rds
inst/extdata/networks/curated/pazar/network.rds
inst/extdata/networks/curated/reviews/network_with_pubmed.rds
inst/extdata/networks/curated/tf_act/network_with_pubmed.rds
inst/extdata/networks/curated/tf_e/network.rds
inst/extdata/networks/curated/tred_via_reg_network/network.rds
inst/extdata/networks/curated/trrd_via_tf_act/network.rds
inst/extdata/networks/curated/trrust/network_with_pubmed.rds
inst/extdata/networks/inferred/gtex/pantissue/network.rds
inst/extdata/networks/inferred/tcga/pancancer/network.rds
inst/extdata/networks/tfbs/hocomoco/network.rds
inst/extdata/networks/tfbs/jaspar/network.rds
inst/scripts/01_curated_resources.R
inst/scripts/02_chip_seq.R
inst/scripts/03_tfbs.R
inst/scripts/04_inferred.R
inst/scripts/05_consensus.R
inst/scripts/README.md
inst/scripts/misc.R
inst/scripts/utils.R
inst/testdata/output_eset.rds
inst/testdata/output_eset_tidy.rds
inst/testdata/output_matrix.rds
inst/testdata/output_matrix_tidy.rds
inst/testdata/output_seurat.rds
inst/testdata/toy_eset.rds
inst/testdata/toy_matrix.rds
inst/testdata/toy_seurat.rds
man/df2regulon.Rd
man/dorothea_hs.Rd
man/dorothea_mm.Rd
man/entire_database.Rd
man/pipe.Rd
man/run_viper.Rd
tests/testthat.R
tests/testthat/test-helpers.R
tests/testthat/test-viper_wrapper.R
vignettes/bulk_vignette.Rmd
vignettes/references.bib
vignettes/single_cell_vignette.Rmd
