Man pages for sagade/inf460
Misc tools for daily analysis
| AlignPlots | Align ggplo2 plots vertically |
| CIndexTest | CIndexTest |
| CoxP | Helper function to calculate Cox Model p values |
| CreateSurvivalFrame | Creates a survival data frame |
| ExtractHR | 'coxph' and related objects |
| ExtractOR | Function to extract odds-ratios, confidence intervals, and p... |
| ggkm | Kaplan Meier Plot from Matt Cooper... |
| LogRankP | Helper function to calculate Logrank Test p values |
| multiplot | muliplot |
| NormalizeQuantilesTemplate | Normalize Quantiles with another data matrix as template to... |
| ParseMatrixFile | Helper function to read clinical annotation from GEO Matrix... |
| PerformLimma | A convenient wrapper for limma (moderated t-test) |
| plot.citest | Plot function for 'citest' class |
| print.citest | Print function for 'citest' class |
| print.ggkm | Print function for ggkm plots |
| PrintHR | Prints output of Cox model |
| PrintLatex | Helper function to make Hmisc's latex easier |
| qplot_survival | Survival (KM) plot for ggplot2 |
| ReplaceCoefNames | Helper function to replace factors in coeffecients by factor:... |
| SplitGraphs | SplitGraphs Splits list of ggplot2 plots into several grids... |
| SplitVec | function to split a vector in pieces, needed for e.g. cross... |
| SummarizeProbes | Function to summarize probes of an expression matrix based on... |
