Man pages for samhforbes/digitizeR
fNIRS digitization cleanup and template creator
| adjust_points | Adjust the points so they have the right number |
| adjust_points2 | Adjust points but with NAs instead of last row. |
| align_all_caps_nested | Align all nested caps to all other caps in a cap size |
| align_to_template | Align a dataset to the template for each cap size |
| align_to_template2 | Align a partial dataset to the template for each cap size |
| calc_3d_dist | calculate 3d distance |
| calc_dist_and_replace_na | calculate the 3d distance and replace with NAs when outside... |
| calc_dist_and_replace_template | Calculate the 3d distance and replace points outside with the... |
| calc_participant_numbers | Calculate participant numbers |
| count_nested_aligned_caps | count all caps that align with each participant in each cap... |
| find_greatest_alignment | Find the best cap to align to |
| greatest_alignment | See the number of caps that align with the best candidate |
| headwise_replacement | Headwise replacement |
| iterative_replacement | iterative replacement |
| kabsch | Kabsch Algorithm |
| make_full_templates | Make final or full templates after the partial templates |
| make_partial_templates | create partial preliminary templates from data |
| modified_kabsch | modified version of the kabsch algorithm |
| modified_kabsch2 | a second modified version of the kabsch algorithm to work on... |
| pipe | Pipe operator |
| plot_one_participant | Plot the cap of a single participant |
| plot_template | Plot a template from the template dataset to see how they... |
| plot_visual_alignment | Plot to see the alignment of landmarks for each cap size |
| prepare_and_make_templates | prepare and make template |
| read_in_caps | read in caps |
| replace_nas_with_template | replace NAs with template |
| rezero_caps | rezero caps |
| rezero_template | Rezero template |
| rezero_template_ind | rezero and sanity check templates |
| save_caps | Save caps to disk as digpts.txt |
| save_templates | Save template output |
| select_caps_by_npoints | select caps to use by a certain number of points |
| select_caps_without_npoints | select only the caps without a number of points |
| threestep_alignment | three step replacement |
