Files in sbastkowski/NNLSexperiment
Calculates proportions of contribution of microbial communities to mixed communities.
.Rbuildignore
.gitignore
DESCRIPTION
Data/mappingFile.txt
Data/otu_table_complete.txt.biom
Data/output_plots.pdf
Data/output_solutionWeights.txt
Dockerfile
NAMESPACE
NNLSexperiment.Rproj
R/data-prep.R
R/make-plots.R
R/nnls_set_up.R
R/run-nnls.R
README.md
Scripts/run_example.R
Scripts/simulator.R
tests/output_plots.pdf
tests/output_solutionWeights.txt
tests/testthat.R
tests/testthat/Testdata/Expected_read_data_OTUtable.csv
tests/testthat/Testdata/Expected_read_data_Taxtable.csv
tests/testthat/Testdata/SimOTU.biom
tests/testthat/Testdata/SimTax.csv
tests/testthat/Testdata/Simtax.biom
tests/testthat/Testdata/biomTest.biom
tests/testthat/Testdata/expectedOTU_pooled.csv
tests/testthat/Testdata/expected_A.csv
tests/testthat/Testdata/expected_b.csv
tests/testthat/Testdata/expected_run_full_nnls_solutions.csv
tests/testthat/Testdata/expected_run_nnls_solutions.csv
tests/testthat/Testdata/expected_weights_to_percentage.csv
tests/testthat/Testdata/expected_werights_to_percentage.csv
tests/testthat/Testdata/mappingFile.txt
tests/testthat/Testdata/otu_table_complete.txt.biom
tests/testthat/Testdata/test_pool_df.csv
tests/testthat/tests.R
