API for sbenfatto/PARIS
PAn-canceR Inferred Synthetic lethalities (PARIS), a machine learning-based approach to predict cancer vulnerabilities
| Global functions | |
|---|---|
| HTBreaks | Man page Source code |
| HTBreaks_hist | Man page Source code |
| RF_exp | Man page Source code |
| RF_mut | Man page Source code |
| add_group | Man page Source code |
| add_imp_scores | Man page Source code |
| add_imp_scores_loop | Man page Source code |
| compute_interaction_freq | Man page Source code |
| filter_essential_genes | Man page Source code |
| generateCol | Source code |
| get_paralog_biomart | Man page Source code |
| get_stringdb_interactions | Man page Source code |
| load_imp_scores | Man page Source code |
| load_imp_scores2 | Man page Source code |
| myinfo | Man page |
| mynewcn | Man page |
| mynewexp | Man page |
| mynewmerge | Man page |
| mynewmut | Man page |
| mystat | Man page |
| plot_box_def_dep | Man page Source code |
| plot_box_mut_dep | Man page Source code |
| plot_common_pairs | Man page Source code |
| plot_mut_dep | Man page Source code |
| plot_rank_def_exp_dep | Man page Source code |
| plot_rank_def_ratio_dep | Man page Source code |
| plot_rank_def_ratio_dep_by_disease | Man page Source code |
| plot_rank_exp_dep | Man page Source code |
| plot_rank_exp_dep_sub | Man page Source code |
| plot_rank_mut_dep | Man page Source code |
| plot_rank_mut_dep_sub | Man page Source code |
| plot_sca_exp_dep | Man page Source code |
| plot_sca_exp_dep_ratio | Man page Source code |
| plot_sca_mut_dep | Man page Source code |
| plot_stringdb_interactions_by_group | Man page Source code |
| plot_stringdb_interactions_combined_score_by_group | Man page Source code |
| plot_top_rank | Man page Source code |
| plot_top_rank_color | Man page Source code |
| plot_upset | Man page Source code |
| plot_vl_mut_dep | Man page Source code |
| plotboruta | Man page Source code |
| run_PARIS | Man page Source code |
| scale01 | Man page Source code |
| select_pairs | Man page Source code |
| select_pairs2 | Man page Source code |
| subset_by_threshold | Man page Source code |
