Files in sbenfatto/PARIS
PAn-canceR Inferred Synthetic lethalities (PARIS), a machine learning-based approach to predict cancer vulnerabilities
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.Rhistory
R/Main.R
R/RF_feature_selection.R
R/data.R
R/plots_utils.R
R/utils.R
README.Rmd
README.md
data/myinfo.rda
data/mynewcn.rda
data/mynewexp.rda
data/mynewmerge.rda
data/mynewmut.rda
data/mystat.rda
man/HTBreaks.Rd
man/HTBreaks_hist.Rd
man/RF_exp.Rd
man/RF_mut.Rd
man/add_group.Rd
man/add_imp_scores.Rd
man/add_imp_scores_loop.Rd
man/compute_interaction_freq.Rd
man/filter_essential_genes.Rd
man/get_paralog_biomart.Rd
man/get_stringdb_interactions.Rd
man/load_imp_scores.Rd
man/load_imp_scores2.Rd
man/myinfo.Rd
man/mynewcn.Rd
man/mynewexp.Rd
man/mynewmerge.Rd
man/mynewmut.Rd
man/mystat.Rd
man/plot_box_def_dep.Rd
man/plot_box_mut_dep.Rd
man/plot_common_pairs.Rd
man/plot_mut_dep.Rd
man/plot_rank_def_exp_dep.Rd
man/plot_rank_def_ratio_dep.Rd
man/plot_rank_def_ratio_dep_by_disease.Rd
man/plot_rank_exp_dep.Rd
man/plot_rank_exp_dep_sub.Rd
man/plot_rank_mut_dep.Rd
man/plot_rank_mut_dep_sub.Rd
man/plot_sca_exp_dep.Rd
man/plot_sca_exp_dep_ratio.Rd
man/plot_sca_mut_dep.Rd
man/plot_stringdb_interactions_by_group.Rd
man/plot_stringdb_interactions_combined_score_by_group.Rd
man/plot_top_rank.Rd
man/plot_top_rank_color.Rd
man/plot_upset.Rd
man/plot_vl_mut_dep.Rd
man/plotboruta.Rd
man/run_PARIS.Rd
man/scale01.Rd
man/select_pairs.Rd
man/select_pairs2.Rd
man/subset_by_threshold.Rd
vignettes/.gitignore
vignettes/example.Rmd
