Man pages for scientific-computing-solutions/badminton
Simulation of Continuous-Time Discrete-Space Markov Chains
| AddArm.ProgressionGraph | Allows an entire arm to be added to an object of type... |
| AddEdge.ProgressionGraph | Adds edges to an object of type 'ProgressionGraph' |
| AddNode.ProgressionGraph | Adds nodes to an object of type 'ProgressionGraph' |
| AddVisitSchedule.ProgressionGraph | Attach a visit schedule to nodes in 'ProgressionGraph' |
| badminton | Common code for time-to-event packages |
| crossOver_functional | Create a function for parameterizing cross over probabilities |
| EndState | Auxiliary function to calculate end state for subjects |
| EvaluateFormula.EventSim | Evaluate transition rates parameterized by functions |
| EvaluateFormula.ProgressionGraph | Evaluate the formulae of a 'ProgressionGraph' object using... |
| GenerateRates.EventSim | Generate a list of hazard rates for use in Simulation |
| GenerateStartStateVector | Generate a list of patient start states |
| GeneratRateMatrix.ProgressionGraph | Outputs a matrix of rates from the edge Data of a... |
| GetCalendarEndTimes.Switches | Returns the calendar times for rate matrices required for... |
| GetCalendarSwitchIndexes.Switches | Calculate cumulative sum of length of vectors in... |
| GetEdgeProperty.ProgressionGraph | Returns a matrix of values from edge properties |
| GetIndex.Switches | An indexing function for 'switch' objects |
| GetParameters.EventSim | Returns a vector with names 'object$params'. |
| GetPatientEndTimes.Switches | Returns patient times for tate matrices requred for Gillespe... |
| GetResetEdges.ProgressionGraph | Return a list of edges with isResetEdge True |
| GetShapes.ProgressionGraph | Outputs a matrix of shapes from the edge Data of a... |
| gillespie | The Gillespie algorithm for simulating continuous time Markov... |
| InitializeEventSet | Creates an 'EventSet' object |
| InitializeEventSim | Generate an object of type 'EventSim' |
| InitializeProgressionGraph | Creates an object of type 'ProgressionGraph' |
| InitializeStudySwitches | Creates an object of type 'Switches', which contains the... |
| InsertEvent.EventSet | Insert 'Event' into 'EventSet' object |
| InsertParameter.EventSim | Insert more parameter names into an 'EventSim' object |
| InsertRate.EventSim | Insert a transition rate into 'EventSim' object |
| InsertRate.ProgressionGraph | Insert a rate value/function into a 'ProgressionGraph' |
| is.DAG | Checks whether a graphNEL object is a DAG |
| IsEdge.ProgressionGraph | Returns True if edges are on DAG |
| IsEmpty.ProgressionGraph | True iff 'ProgressionGraph' has no nodes |
| MatchWithException | Attempts to find element in a container |
| MaxOneInfPerRow | Return TRUE if the given matrix contains at most one Inf per... |
| NewEvent | Create an event which is used for processing the raw... |
| NewVisitSchedule | Create a new visit schedule |
| non_crossOver_functional | Create a function for parameterizing cross over probabilities |
| NumberOfRateMatrices.Switches | This function returns the number of different hazard matrices... |
| plot.ProgressionGraph | Plot the 'ProgressionGraph' DAG |
| ProcessEventSimOutput | The main function for producing processed output for the... |
| ProcessOneEvent | Process a sngle event for a single patient |
| ProcessOneSubject | Process the events for a single patient |
| SetIsResetEdge.ProgressionGraph | Set the 'isResetEdge' property of edges in the... |
| SetIsVisitNode.ProgressionGraph | Set the isVisitNode variable for nodes in 'ProgressionGraph' |
| SetShape.ProgressionGraph | Set the Weibull shape parameter for the hazard functions for... |
| SetSubjectSwitchTimes.Switches | Set the patient times at which the hazard functions changes |
| simpleAccrual | Define an accrual model for simple power-law accrual |
| SimpleStudyProgressionGraph | Create a 'ProgressionGraph' describing a simple disease... |
| Simulate.EventSim | Perform a time to event simulation |
| simulate.recruitmentModel | Simulate recruitment times from an accrual model |
| StartState | Auxiliary function to calculate start state for subjects |
| TimeToHit | Auxiliary function to calculate first hitting time for a set... |
| TimeToHitEdge | Auxiliary function to calculate first transition time for a... |
| ValidateAgainstProgressionGraph.EventSet | Sanity Check an 'EventSet' with respect to a... |
| ValidateNullArgs | Validate which arguments are null for different 'NewEvent'... |
| ValidateSwitchTimes | Check the times (both patient and calendar) for hazard... |
