Files in seabbs/AssessBCGPolicyChange
Assess the Evidence Used to Motivate the 2005 Change in BCG Vaccination Policy
.Rbuildignore
.gitignore
AssessBCGPolicyChange.Rproj
DESCRIPTION
Dockerfile
LICENSE
Makefile
NAMESPACE
R/TB_decrease_as_matrix.R
R/calc_model_sum_stat.R
R/fit_model_to_data.R
R/gen_annual_change_scenarios.R
R/gen_scenario_results.R
R/inc_rates_uk_e.R
R/nots_ew.R
R/sample_annual_decrease_inc_rates.R
R/sample_annual_decrease_nots.R
R/sample_inc_rate.R
R/sample_incidence_rates.R
R/sample_model_parameters.R
R/sample_per_decrease.R
R/simulate_sutherland_model.R
R/sutherland_TB_decrease.R
R/sutherland_data.R
R/sutherland_gen_time.R
R/sutherland_incidence_rates.R
R/sutherland_model.R
R/sutherland_results.R
R/sutherland_trans_params.R
README.Rmd
README.md
_pkgdown.yaml
binder/Dockerfile
data-raw/Makefile
data-raw/inc_rates_uk_e.R
data-raw/inc_rates_uk_e.csv
data-raw/nots_ew.R
data-raw/nots_ew.csv
data-raw/package_set_up.R
data-raw/sutherland_TB_decrease.R
data-raw/sutherland_TB_decrease.csv
data-raw/sutherland_data.R
data-raw/sutherland_data.rda
data-raw/sutherland_gen_time.R
data-raw/sutherland_gen_time.csv
data-raw/sutherland_incidence_rates.R
data-raw/sutherland_incidence_rates.rda
data-raw/sutherland_results.R
data-raw/sutherland_results.csv
data/inc_rates_uk_e.rda
data/nots_ew.rda
data/sutherland_TB_decrease.rda
data/sutherland_data.rda
data/sutherland_gen_time.rda
data/sutherland_incidence_rates.rda
data/sutherland_results.rda
docs/LICENSE-text.html
docs/articles/analysis_plan.html
docs/articles/index.html
docs/articles/paper.html
docs/articles/paper_files/figure-html/graph-avg-add-nots-1.png
docs/articles/paper_files/figure-html/graph-vacs-to-prev-1.png
docs/articles/paper_files/figure-html/plot-annual-change-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/TB_decrease_as_matrix.html
docs/reference/calc_model_sum_stat.html
docs/reference/fit_model_to_data.html
docs/reference/gen_annual_change_scenarios.html
docs/reference/gen_scenario_results.html
docs/reference/inc_rates_uk_e.html
docs/reference/index.html
docs/reference/nots_ew.html
docs/reference/sample_annual_decrease_inc_rates-1.png
docs/reference/sample_annual_decrease_inc_rates-2.png
docs/reference/sample_annual_decrease_inc_rates-3.png
docs/reference/sample_annual_decrease_inc_rates.html
docs/reference/sample_annual_decrease_nots.html
docs/reference/sample_inc_rate.html
docs/reference/sample_incidence_rates.html
docs/reference/sample_model_parameters.html
docs/reference/sample_per_decrease.html
docs/reference/simulate_sutherland_model.html
docs/reference/sutherland_TB_decrease.html
docs/reference/sutherland_data.html
docs/reference/sutherland_gen_time.html
docs/reference/sutherland_incidence_rates.html
docs/reference/sutherland_model.html
docs/reference/sutherland_results.html
docs/reference/sutherland_trans_params.html
docs/sitemap.xml
man/TB_decrease_as_matrix.Rd
man/calc_model_sum_stat.Rd
man/fit_model_to_data.Rd
man/gen_annual_change_scenarios.Rd
man/gen_scenario_results.Rd
man/inc_rates_uk_e.Rd
man/nots_ew.Rd
man/sample_annual_decrease_inc_rates.Rd
man/sample_annual_decrease_nots.Rd
man/sample_inc_rate.Rd
man/sample_incidence_rates.Rd
man/sample_model_parameters.Rd
man/sample_per_decrease.Rd
man/simulate_sutherland_model.Rd
man/sutherland_TB_decrease.Rd
man/sutherland_data.Rd
man/sutherland_gen_time.Rd
man/sutherland_incidence_rates.Rd
man/sutherland_model.Rd
man/sutherland_results.Rd
man/sutherland_trans_params.Rd
peer-review/cover-letter.Rmd
peer-review/cover-letter.docx
peer-review/figs/fig-1.tiff
peer-review/figs/fig-2.tiff
peer-review/figs/fig-3.tiff
peer-review/paper-review-markup.docx
peer-review/paper-review.docx
peer-review/review-response-2.Rmd
peer-review/review-response-2.docx
peer-review/review-response.Rmd
peer-review/review-response.docx
peer-review/si-review.docx
tests/testthat.R
vignettes/Makefile
vignettes/analysis_plan.Rmd
vignettes/drafts/analysis_plan/analysis_plan.docx
vignettes/drafts/analysis_plan/analysis_plan.html
vignettes/drafts/paper/paper.docx
vignettes/drafts/paper/paper.html
vignettes/paper.Rmd
vignettes/resources/bmj.csl
vignettes/resources/library.bib
vignettes/resources/style.docx
vignettes/results/paper/annual_nots-mw.rda
vignettes/results/paper/annual_nots_tab.rda
vignettes/results/paper/avg-inc.rda
vignettes/results/paper/avg-not.rda
vignettes/results/paper/fig-1.png
vignettes/results/paper/fig-1.tiff
vignettes/results/paper/fig-2.png
vignettes/results/paper/fig-2.tiff
vignettes/results/paper/fig-3.png
vignettes/results/paper/fig-3.tiff
vignettes/results/paper/inc_rates_scenarios.rda
vignettes/results/paper/mann-whitney.rda
vignettes/results/paper/max-not.rda
vignettes/results/paper/min-not.rda
vignettes/results/paper/model-valid.rda
vignettes/results/paper/nots_scenarios.rda
vignettes/results/paper/parameter_samples.rda
vignettes/results/paper/per_annual_change.rda
vignettes/results/paper/scenario_results.rda
vignettes/results/paper/sutherland_scenarios.rda
vignettes/results/paper/tab-annual_nots_prevented.rds
vignettes/results/paper/tab-annual_primary_nots_prevented.rds
vignettes/results/paper/tab-annual_secondary_nots_prevented.rds
vignettes/results/paper/tab-vac-prevent.rds
vignettes/results/paper/table-vac-prev.rda
vignettes/results/paper/total_not_prev.rda
vignettes/results/paper/vaccines_to_prevent.rda
