Man pages for sean-rohan-NOAA/akfishcondition
Groundfish morphometric condition indicator
| AI_INDICATOR | Aleutian Islands (1991-2024) |
| bundle_vast_condition | Read-in VAST index outputs from .csv |
| calc_lw_residuals | A function to calculate length-weight residuals |
| calc_lw_residuals_multimodel | Length-weight residuals from best linear regression among... |
| EBS_INDICATOR | Eastern Bering Sea continental shelf (1999-2022) |
| ESR_SETTINGS | Settings for Ecosystem Status Reports |
| get_condition_data | Get data for index calculations |
| GOA_INDICATOR | Gulf of Alaska (1990-2023) |
| make_vast_table | Generate tables with b coefficient and VAST Settings |
| NBS_INDICATOR | Northern Bering Sea (2010-2022) |
| PCOD_ESP | Pacific cod Ecosystem and Socioeconomic Profile (ESP)... |
| plot_anomaly_timeseries | Make condition time series plot |
| plot_species_bar | Make single species bar plots |
| plot_species_stratum_bar | Make single species stratum bar plots |
| plot_stratum_stacked_bar | Make condition time series stacked bar plot |
| plot_two_timeseries | Two condition time series and correlation |
| plot_xy_corr | Plot of condition versus condition |
| poststratify_goa_hauls | Post-stratify GOA hauls based on 2025 design |
| run_condition_doy | Condition indicator calculated based on day of year |
| run_vast_condition | Run VAST to estimate fish condition |
| set_plot_order | Set species plotting order |
| set_stratum_order | Set stratum plotting order |
| st_line_midpoints | Find the midpoint of an sf LINESTRING |
| theme_blue_strip | Multi-panel map theme with blue strip |
| theme_condition_index | Default condition index theme |
| theme_pngs | Default png theme |
| weight_lw_residuals | A function to weight length-weight residuals by catch |
