Files in seanchen607/deplink
Compares the genetic/epigenetic features between cancer cell lines with different dependencies of a gene set (signature)
DESCRIPTION
NAMESPACE
R/cancertypeHigh.R
R/cancertypeLandscape.R
R/cancertypeLow.R
R/chromatinModification.R
R/cnv.R
R/cosmic.R
R/dependency.R
R/deplink.R
R/drugGDSC.R
R/drugPRISM.R
R/emt.R
R/expressions.R
R/hallmark.R
R/isg.R
R/mRNAsi.R
R/msi.R
R/mutations.R
R/tmb.R
README.md
inst/extdata/CCLE_COSMIC_nodup.csv
inst/extdata/CCLE_GlobalChromatinProfiling_20181130_single.csv
inst/extdata/CCLE_depMap_19q1_TPM_3digits_nodup_mRNAsi.csv
inst/extdata/CCLE_depMap_19q1_zscore_3digits_nodup.share.EMT.score.csv
inst/extdata/CCLE_depMap_19q4_TPM_2digits.zip
inst/extdata/Cell_lines_annotations_20181226.csv
inst/extdata/GDSC_Screened_Compounds.csv
inst/extdata/GDSC_v17.3_fitted_dose_response.zscore_DepMap.csv
inst/extdata/Ghandi2019_MSI.csv
inst/extdata/PRISM_primary_replicate_collapsed_logfold_change.zip
inst/extdata/PRISM_primary_replicate_collapsed_treatment_info.csv
inst/extdata/avana_ceres_celllines_2019q4.csv
inst/extdata/avana_ceres_celllines_2019q4_meta_ISG.score.csv
inst/extdata/avana_ceres_gene_effects_2019q4_noNA_3digits.zip
inst/extdata/cancer_cellline_hallmark.score_2019q4.csv
inst/extdata/depmap_19q1_mutation_calls.TMB.csv
inst/extdata/depmap_19q2_mutation_calls.damage.hotspot_matrix.zip
inst/extdata/public_19q1_gene_cn_nodup.share.sig.cutoff1.csv
inst/script/load_libs.R
man/cancertypeHigh.Rd
man/cancertypeLandscape.Rd
man/cancertypeLow.Rd
man/chromatinModification.Rd
man/cnv.Rd
man/cosmic.Rd
man/dependency.Rd
man/deplink.Rd
man/drugGDSC.Rd
man/drugPRISM.Rd
man/emt.Rd
man/expressions.Rd
man/hallmark.Rd
man/isg.Rd
man/mrnasi.Rd
man/msi.Rd
man/mutations.Rd
man/tmb.Rd
vignettes/deplink.Rmd
vignettes/deplink.html
