Man pages for shaelebrown/TDAML
Machine Learning and Inference for Topological Data Analysis
| analyze_representatives | Analyze the data point memberships of multiple representative... |
| bootstrap_persistence_thresholds | Estimate persistence threshold(s) for topological features in... |
| check_PyH_setup | Make sure that python has been configured correctly for... |
| check_ripser | Verify an imported ripser module. |
| diagram_distance | Calculate distance between a pair of persistence diagrams. |
| diagram_kernel | Calculate persistence Fisher kernel value between a pair of... |
| diagram_kkmeans | Cluster a group of persistence diagrams using kernel k-means. |
| diagram_kpca | Calculate the kernel PCA embedding of a group of persistence... |
| diagram_ksvm | Fit a support vector machine model where each training set... |
| diagram_mds | Dimension reduction of a group of persistence diagrams via... |
| diagram_to_df | Convert a TDA/TDAstats persistence diagram to a data frame. |
| distance_matrix | Compute a distance matrix from a list of persistence... |
| enclosing_radius | Compute the enclosing radius for a dataset. |
| gram_matrix | Compute the gram matrix for a group of persistence diagrams. |
| import_ripser | Import the python module ripser. |
| independence_test | Independence test for two groups of persistence diagrams. |
| loss | Turner loss function for a list of groups (lists) of... |
| permutation_model_inference | Model inference with permutation test. |
| permutation_test | Permutation test for finding group differences between... |
| plot_diagram | Plot persistence diagrams |
| plot_vr_graph | Plot a VR graph using the igraph package. |
| predict_diagram_kkmeans | Predict the cluster labels for new persistence diagrams using... |
| predict_diagram_kpca | Project persistence diagrams into a low-dimensional space via... |
| predict_diagram_ksvm | Predict the outcome labels for a list of persistence diagrams... |
| PyH | Fast persistent homology calculations with python. |
| TDApplied-package | TDApplied: Machine Learning and Inference for Topological... |
| universal_null | Filtering topological features with the universal null... |
| vr_graphs | Compute Vietoris-Rips graphs of a dataset at particular... |
