Man pages for shambam/MyFirstPackage
Some functions for single-cell analysis
| CalcTSNE | Calculate tSNE over 3 dims |
| clusterCells | Clusters the data and splits the dendrogram into k clusters |
| ColourTSNEbyClust | Makes a 3D tSNE plot where cells are coloured by cluster |
| ColourTSNEbyGeneExpr | Makes a 3D tSNE plot where cells are coloured by the... |
| GetVarGenes | Calculates the top N variable genes from a scell object |
| MakeHeatMap | Make a heatmap of the previously defined var genes |
| readFACS | Read FACS data and put it into a scell object |
| ReadNewSCell | Make a new scell class from a file |
| scell-class | Class defintion of an scell object |
| ViolinPlotFACSfromCluster | Make a violin plot of the facs data from particular cluster... |
