Files in shaunpwilkinson/aphid
Analysis with Profile Hidden Markov Models
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/Viterbi.R
R/align.R
R/aphid.R
R/backward.R
R/data.R
R/deriveHMM.R
R/derivePHMM.R
R/forward.R
R/generate.R
R/plot.R
R/posterior.R
R/print.R
R/read.R
R/train.R
R/utils.R
R/weight.R
R/write.R
README.md
aphid.Rproj
cran-comments.md
data/casino.RData
data/globins.RData
data/substitution.RData
inst/CITATION
man/Viterbi.Rd
man/align.Rd
man/aphid.Rd
man/backward.Rd
man/casino.Rd
man/deriveHMM.Rd
man/derivePHMM.Rd
man/forward.Rd
man/generate.Rd
man/globins.Rd
man/logsum.Rd
man/map.Rd
man/plot.HMM.Rd
man/plot.PHMM.Rd
man/posterior.Rd
man/print.Rd
man/readPHMM.Rd
man/substitution.Rd
man/train.Rd
man/unalign.Rd
man/weight.Rd
man/writePHMM.Rd
src/Makevars
src/RcppExports.cpp
src/ViterbiC.cpp
src/init.cpp
src/map.cpp
src/utils.cpp
tests/testthat.R
tests/testthat/test_HMM.R
tests/testthat/test_PHMM.R
vignettes/aphid-vignette.Rmd
vignettes/aphid.bib
