Files in shbrief/bioBakeryR
Run bioBakery workflows in Terra
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/biobakery_currentInput.R
R/biobakery_updateInput.R
README.md
bioBakeryR.Rproj
inst/extdata/ibdmdb_demo_metadata.txt
inst/extdata/ibdmdb_file_list.txt
inst/extdata/outputs/HSM7J4NY/HSM7J4NY.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_ecs.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_ecs_relab.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_genefamilies.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_genefamilies_relab.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_kos.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_pathabundance.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_pathabundance_relab.tsv
inst/extdata/outputs/HSM7J4NY/HSM7J4NY_pathcoverage.tsv
inst/extdata/outputs/data/humann_feature_counts.tsv
inst/extdata/outputs/data/humann_read_and_species_count_table.tsv
inst/extdata/outputs/data/kneaddata_read_count_table.tsv
inst/extdata/outputs/data/metaphlan_taxonomic_profiles.tsv
inst/extdata/outputs/data/microbial_counts_table.tsv
inst/extdata/outputs/data/pathabundance_relab.tsv
inst/extdata/outputs/data/qc_counts_orphans_table.tsv
inst/extdata/outputs/data/qc_counts_pairs_table.tsv
inst/extdata/outputs/data/taxa_counts_table.tsv
inst/extdata/outputs/data/top_average_pathways_names.tsv
inst/extdata/outputs/wmgx_report.pdf
inst/extdata/wtx.json
inst/extdata/wtx_config.json
inst/extdata/wtx_input_template.rds
man/biobakery_currentInput.Rd
man/biobakery_updateInput.Rd
